Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00515 ATGGTGGTTGGGGAAATGGACACAGAGGAGCCGCAAGTTGAGGTTCCTTGGAACCCCACCACCCCTATTAAGCCCGTTCCTCTAAAACCAGTGCCGATCTACACGCCTTTGGAGAGAAACCACATGGGTCATGCAAATGGAGCAGTTGCATGTGTTGAATTCTCACTTGCCCAAGAGAAAATTTGCGGGCCACATGATGGGTCAAACTTTGCCGGTTACAGCGGCAAAACTTGTGAACAGACAGCTTCAGATGCTGTTTCTAGCTACAGCAAACTTGGATTTTGTGAACATTTGTTTGCGGTTGAGGCTGAATCAAGGAACCCTGGTGTGACACAAAGGAATAATGATAGATTGAAGAACCCGTTTGTTCCTTCGTTCATCCTTGACAATGCCAAGGACCCTCAGGAAACATACATTTCTTGCTGTAGCAAGACAACTTCCCATGATACCCCATTTACCCTTGACAGTGGCAACAAAGAAGCAAGCAGACTAATAGCATCAATGCAAATCAATATGGAAGAAAAGGATCCAGGAGGGGAAGAGAGAAATGTCCCCACTGAGGTTGACAATAATGTACCACCAAACAGCATAGAGCTTTGCAACCCTGGTGTAGAATCTGCTTCCCTTTCTTCACCATTAAGGGAGAATGGCAACCCGGATAAGGGAAGCACTCATGATCCTGATCTTGGTAAAACACCACAACAAAAACCAAGGAGAAGAAAGCACCGTCCCAAGGTAATTAAAGAAATCAAACCCAAAAGTACTCGGAAGCCTGCTACCCCAAAGCCTGTTCAATCAAAAGAAAACCCAACTGCCAAGAGGAAGTATGTGAGAAGGAAAGGATTGGAACAAACTTCTCCAACAGAAGTGACTACAGAATTTACTAAAGAAATGCCTGAATCTACCAAAGTGTCTTGTAGAAGGACCTTAAATTTTGACGCAGGAACAAGAGATGAAAGTCCTGCTAGCATGGAAAATACAACTGCACTTTTGGGAAAAGTAAATGGGGCACCGGTAGAAGAAACAAATGTAGGCCTCGCATTTGATCTAAGCACTTCATTGAAGCAGGCATCAAACAATTATAAGTCATTACCCAAAACCTCTGAGACAAAGTCAGACAAACAGCCAACTGCCAAGAGGAAGTATGTGAGAAGGAAAGGAGTGAACAAAACTTCTGATCCTCCAATGGAAGTTACTGGAGAACTGACTAAAGAAAAGATGCCTGAATCCACCCAAATGTCATGTACAGGGTCTGTAAATTTAGATGAAAGAGCAAGATATCAAAGTTATCCAGTCAAAGACAACCCAACAGCACATCCTGGCAGTGAAATTGGTCTAGTCATGCAGGAAACGAACATCAGCCTTGCCTATGACCTAAACACTTCCATGAAGCAGGTATCAAATAGTTACATATCATTACCAGAAGACACACAAGCCCCAAATGCATCTTCAAGAAAAACAAGCTCCAGGACAAAGCCAGAGGAAAACCCAACGGCCAAGAGGAAGTATACAAGAAAGAAAAGACCATATAAGACTTCTCCAACAGAAGTGACTGGAGAATTGACTGAAGAAAAGATGCCTGAATCCACCCAAGTGTTGTTTACAGGGTCCATAAATTTTGATGAAAGAGCAAGAGATCAAAGTTATGCAGTACAAGAGAATCCAATTGTGCATATGGGCAGTGAAATTGGTGTAGTCATGCAGGATATGAATGTAGGCTTTGCCTATGATCTAAACACTTACATGAAGCAAGCATCAAACAGTTCCATGTCATTACAAGAAGACAAACGAGCCCCAAATACATCTCGTTCAAGAAGAAAAAGCTCTGGGACAAAGTCAGAGGAAAACCCAACTGACAAGAAGTATGTGAAAAGGAAAGGAATGAACAAGATTTCTGTTCCTCCAACAGAATTACCTGGAGAATTGACTGAAATAAAGATGCCTGCAATCCCTGCATCTGCCCAAATGTCATGCACAGGATCCACAAATTCTGATGAAAGAGCAAAACATAAAAATTATGCAGTCAAAGAGAATACAAATAAACATCCAGGCAGTGAAATTGGTGTAGTCATGCAGGAAATGAATGCAGGCCTTGCCTATGATCTAAGCACTTCAATGAAGCAGGCATTAAATGATGATGTGACATTAACTAAGGAAGCACAAGCTCCAAGTACATCTTCAAAGATCAATCTCCCGGGGGAAAAAACAAAAGAAAACCCAACAGCCAAGAGAAAGTATGTGAGGAAAAACAAATCAAATCCATCTCCTATTCCTCCAACAGAAATGACCGAATTGACTGAAGCAATGGTGCTTGAATCTAACAATATGTCATGGAGAAGGTCCTTAAATTTTGACATGGGAACTGGAGATGAAAATTATGTAGGCAGACAAAATTTAGATTTGCTCATTGGAAAGGAAAATATGGTGTTACAGGAAACAAAAGTAGGCCTTACCTATAATCAAGACACTTGGATGAAGGAGGCATTAAATAATTGCATGCCATTACCTGAGGAAACACAACAACCAAGTTCATCTATTTCAAGAAGCACTCCCCTTGGGGCAAAGCTGAATGTCAACTCTGTAGAAAACATAAACGAAAATGGCCAGGCAACTGCTCAGGATGGAAACCTCAGTAATAACCAAAGTTCAACAAGGTTACAAATGGTTGGTTCAAAGAGAAAACATTCAGGTACCTTTAATCATGCAGATGACAGCAGCCTGAATCTGATTGGGGCACACTATAATGGACTTGCCTCATACCAGACTAACTTATGTGTTCAGTTTCCAAACATACAGAAGAAAAGGAGAACTGATAAGGGGAAAACTTCTATCACTTATGTTACATCTGTGACTACAACAAAAGAAGTCCAACAGACATATCCTCAGGAAGATGCTCTAGTGCATCCATATGCATCAAGCTCCGGCTGCTGGATTTATGGTTCAAGATATAATGCAGCTGGAGTCCCAGCCATAAGTGAATTGACAGAAAGTTCTATTGATAATACTCAAACATTTGATGAGTTCGTCTTGTCTTTGAAAAGGCTGGCAGAAAGATCTCAATCCTCTACTAGTGATCGTGGTTCTCTAACTAGAATTAGAAACTGTGATACTGAACCAAATTGTACTGCAAAACAAGTAGCCTGTGGCAGAGAACAAACATGCATTGATGCTTTAGTTGTAGAGACACGTGCATCACTCATAAAAAAGAAGCGGAATAGAAAGAAAAGTGTTCTTCCCAGTTCAGCACATTCTAGCACAAATAAGATGCTACAGCACCATCATTTTACATTGGGAAATTACCCCTTTCCAATGGGGATGTCATCAGACATTGCTCCTGAAGTACTATGGAAAACCATGAATTATATTGATGCATTAACAGAGCAATTTAGACGACTAAACATAAACACAGAAGCCAGAGACCTTGCATTACATGAGCAGAATGCACTGGTCCCTTATAAGCAGCAAAACAGCCTTAACCATGGAAATGGGGTCATTGTTCCCTTTCAAAACAAGAAACAGCATCCACGACCAAAAGTTGACCTTGACGATGAGACTGAGAGAGTTTGGAAGCTTTTGTTGCTAGATATAAACAGTCATGGGATTGATGGAACTGATGAAGGTAAGGCCAAGTGGTGGGAAGAAGAACGAAATGTGTTCCGTGGACGAGCAGACTCATTTATTGCAAGGATGCATCTTGTACAAGGAGACAGAAGATTTTCTCGATGGAAAGGATCAGTTGTGGATTCAGTGGTTGGAGTTTTCCTCACTCAAAATGTCTCTGACCATCTTTCCAGCTCTGCATACATGTCCCTTGCTGCTCGATTTCCCAAAAAATCAAGCAGTGAGTGCAAAACACACCATGCGGAAGACTCAAGGCTGGTAATCAACGAAACACAAGTGCATATAGTGGAACCAGAAGAGAGCACGGAATGGGATGCAAAATTATTGAATCAATCTGTTTATGACCAGAGTTCTCTAACACTAGACATTGTTGAGCATTCTGGAGAAAAAGAAGCTATCAACAGCAATGATTCCTGTGGAACTAACAGCAGTGTGATTAGCACAGATGAATCAAACTCCAGACTTTCGGAATTATCCCAAAGAAATACAAAGGAACACTGTAGTCCAATGAGGAGTGGACTACTTAGTGATACGATTGAGGAAGCAGAAGAAAAATCATGTTGTGATGGTGATAGGAAAGAGTTACATGACATAGTTTCATCCCAAGGCTCTGTCATTTCATCCCAAATATCTGGAGATTTTTCAAATGATCAAAATCCTGAGAAAGTAGGATCATACTCAGATAGTAACTCAGAAGTAGAAGATCTCTCCAGCACAACAAAGTACAACCATTTTGATAGCAGCACTTCCTTCAGTAAACTTCTTGAAATGGTTAGTTCATCCAAATTTTATGAAGACAACAGTCAAAAAAGCAAATCAACTGAGAACTTAAGCGGTGCATATGATCAACCTATACACATGCCGCATAACAATCCAGTAGAAAGCTTGAAAAAATCAAATTGTACAGAAGGCTCTTCAGAAGCATCCATCACCCAATCCCTTGAATATACTTTGAAACTCACCCCCGACTCAGGAATGCTTGATGTTAACTGCTTTGATCCTTTCAAAACAGAAACCTCGTCAAGTGACTTCTTAAAGAAAAAGGATGAAAATGGCATGAACAGATCAAGTTTTCAAACAAAAGAACCTGCAGGAGAAGTTGCAAGAACCCATTCTCAAAGCATTGTATCTCAAGTCCATCCTCAGGAACCAAACAATCACCTGCAGCAAAGCTTTTTCAACATTTCTGGACAAACTCAAGTTCTTGTGCAGAAAGAAAGGGATGAGCACAAAAATGTCAGGAGGAATGAAAACAATGAGATAAGTTCTGCCCCAATAAAATTAAAGAGCAGGGAACAAGGAAAAGAAAAAAAGGATGATTTTAACTGGGATAGTTTAAGAATAGAAGCACAAGCTAAGGCTGGGAGAAGAGAAAAGACAGAAAACACCATGGATTCTTTGGACTGGGAAGCTGTGAGATGTGCAGATGTCAGTGAAATTGCCAAGACCATCAAAGAACGGGGCATGAACAACAGGCTTGCAGAACGCATTAAGGATTTCCTGAATCGGCTGGTTGAAGAACATGGAAGCACTGACCTTGAGTGGCTTAGAGATGTTCCACCTGACAAAGCAAAAGAATACTTGCTCAGCATAAGAGGATTGGGATTGAAAAGTGTGGAATGTGTGCGGCTTTTAACACTGCACCATCTTGCCTTCCCGGTAGACACAAATGTTGGACGTATAGCAGTACGGCTGGGATGGGTCCCTCTGCAGCCACTGCCTGAGTCACTGCAGTTGCATCTCCTAGAATTGTACCCAGTGTTGGAATCTATACAAAAATATCTCTGGCCTCGACTGTGCAAGCTAGATCAAAAAACACTATATGAGCTACATTACCAGATGATTACTTTTGGAAAGGTCTTCTGTACAAAAAGCAAGCCAAATTGTAATGCATGCCCAATGAGAGGAGAATGTAGACACTTTGCTAGTGCATTTGCAAGTGCAAGGCTTGCATTGCCTGGACCAGAGCAGAAGAGTATAGTTACCACAGCTGGAAATAGTGTGATTGATCAGAATCCATCTGAAATCATCAGTCAGTTGCACTTGCCTCCCCCTGAGAACACAACCCAAGCAGAAGAAATTCAACTAACAGAAGTGTGCAGACAACTGGAATCAAAATCTGAATTAAACATTTGCCAGCCTATCATTGAAGAGCCAACAACTCCAGAGCCAGAATGCTCACAAGTATCACAAACTGACATTGAGGATGCTTTCTACGACGATTCATGTGAAATTCCTACCATCAAGCTTAACATAGAAGAGTTTGCTCTGAATTTACAAAATTACATGCAAGAAAAGATGGAACTTCAAGAAGGTGAAGTGTCAAAGGCATTGGTTGCTTTGAATCCAGAAGCTGCTTCCATTCCTATGCCCAAGCTAAAGAATGTGAGCCGATTACGAACAGAACACTGTGTTTATGAACTTCCAGATACACATCCTCTTCTGCAAGGGTGGGACACACGTGAGCCTGATGATCCAGGCAAATACCTTCTTGCTATATGGACTCCAGGTGAGACAGCAAATTCTATACAGCCACCAGAAAGTAAATGCAGCTCTCAAGAAGAATTCGGGCAGCTCTGTAATGAGAAGGAATGTTTCTCGTGCAACAGTTTCCGTGAAGCAAATTCACAGATAGTTAGAGGGACACTCCTGATACCATGTCGAACAGCTATGCGGGGGAGCTTTCCACTGAATGGCACCTATTTCCAAGTCAATGAGGTATTTGCTGATCATGTCTCAAGTATTGACCCAATCAGTGTACCCCGAAGTTGGATCTGGAACCTCAATAGGCGAACAGTATATTTTGGAACCTCTGTACCAACAATATTTAAAGGTTTAACAACACAAGAAATTCAACAATGCTTTTGGAGGGGTTATGTCTGTGTGCGGGGTTTTGACAGGGAAACACGAGCACCCCGTCCTCTGATGGCTAGGCTACATTTCCCAGCAAGCAAGTTAGCCAAGACAAAAGAGAAGACAAAAAAGGAATCGAGTTCGGCAAAATCACGAGGATCAAAATCAAATATAGAACATCCGGAATTGATTTCTAACAGTAGCAACCTTCAAGAAACGGGAAGAGACTGA 6705 0.4145 MVVGEMDTEEPQVEVPWNPTTPIKPVPLKPVPIYTPLERNHMGHANGAVACVEFSLAQEKICGPHDGSNFAGYSGKTCEQTASDAVSSYSKLGFCEHLFAVEAESRNPGVTQRNNDRLKNPFVPSFILDNAKDPQETYISCCSKTTSHDTPFTLDSGNKEASRLIASMQINMEEKDPGGEERNVPTEVDNNVPPNSIELCNPGVESASLSSPLRENGNPDKGSTHDPDLGKTPQQKPRRRKHRPKVIKEIKPKSTRKPATPKPVQSKENPTAKRKYVRRKGLEQTSPTEVTTEFTKEMPESTKVSCRRTLNFDAGTRDESPASMENTTALLGKVNGAPVEETNVGLAFDLSTSLKQASNNYKSLPKTSETKSDKQPTAKRKYVRRKGVNKTSDPPMEVTGELTKEKMPESTQMSCTGSVNLDERARYQSYPVKDNPTAHPGSEIGLVMQETNISLAYDLNTSMKQVSNSYISLPEDTQAPNASSRKTSSRTKPEENPTAKRKYTRKKRPYKTSPTEVTGELTEEKMPESTQVLFTGSINFDERARDQSYAVQENPIVHMGSEIGVVMQDMNVGFAYDLNTYMKQASNSSMSLQEDKRAPNTSRSRRKSSGTKSEENPTDKKYVKRKGMNKISVPPTELPGELTEIKMPAIPASAQMSCTGSTNSDERAKHKNYAVKENTNKHPGSEIGVVMQEMNAGLAYDLSTSMKQALNDDVTLTKEAQAPSTSSKINLPGEKTKENPTAKRKYVRKNKSNPSPIPPTEMTELTEAMVLESNNMSWRRSLNFDMGTGDENYVGRQNLDLLIGKENMVLQETKVGLTYNQDTWMKEALNNCMPLPEETQQPSSSISRSTPLGAKLNVNSVENINENGQATAQDGNLSNNQSSTRLQMVGSKRKHSGTFNHADDSSLNLIGAHYNGLASYQTNLCVQFPNIQKKRRTDKGKTSITYVTSVTTTKEVQQTYPQEDALVHPYASSSGCWIYGSRYNAAGVPAISELTESSIDNTQTFDEFVLSLKRLAERSQSSTSDRGSLTRIRNCDTEPNCTAKQVACGREQTCIDALVVETRASLIKKKRNRKKSVLPSSAHSSTNKMLQHHHFTLGNYPFPMGMSSDIAPEVLWKTMNYIDALTEQFRRLNINTEARDLALHEQNALVPYKQQNSLNHGNGVIVPFQNKKQHPRPKVDLDDETERVWKLLLLDINSHGIDGTDEGKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAYMSLAARFPKKSSSECKTHHAEDSRLVINETQVHIVEPEESTEWDAKLLNQSVYDQSSLTLDIVEHSGEKEAINSNDSCGTNSSVISTDESNSRLSELSQRNTKEHCSPMRSGLLSDTIEEAEEKSCCDGDRKELHDIVSSQGSVISSQISGDFSNDQNPEKVGSYSDSNSEVEDLSSTTKYNHFDSSTSFSKLLEMVSSSKFYEDNSQKSKSTENLSGAYDQPIHMPHNNPVESLKKSNCTEGSSEASITQSLEYTLKLTPDSGMLDVNCFDPFKTETSSSDFLKKKDENGMNRSSFQTKEPAGEVARTHSQSIVSQVHPQEPNNHLQQSFFNISGQTQVLVQKERDEHKNVRRNENNEISSAPIKLKSREQGKEKKDDFNWDSLRIEAQAKAGRREKTENTMDSLDWEAVRCADVSEIAKTIKERGMNNRLAERIKDFLNRLVEEHGSTDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVTTAGNSVIDQNPSEIISQLHLPPPENTTQAEEIQLTEVCRQLESKSELNICQPIIEEPTTPEPECSQVSQTDIEDAFYDDSCEIPTIKLNIEEFALNLQNYMQEKMELQEGEVSKALVALNPEAASIPMPKLKNVSRLRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESKCSSQEEFGQLCNEKECFSCNSFREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHVSSIDPISVPRSWIWNLNRRTVYFGTSVPTIFKGLTTQEIQQCFWRGYVCVRGFDRETRAPRPLMARLHFPASKLAKTKEKTKKESSSAKSRGSKSNIEHPELISNSSNLQETGRD 2234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00515 2234 MobiDBLite consensus disorder prediction 717 734 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 1415 1441 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 188 218 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 1340 1376 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 2190 2234 - -
Cca02g00515 2234 SUPERFAMILY DNA-glycosylase 1221 1850 IPR011257 GO:0003824|GO:0006281
Cca02g00515 2234 CDD ENDO3c 1675 1793 IPR003265 GO:0006284
Cca02g00515 2234 MobiDBLite consensus disorder prediction 1471 1487 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 2191 2208 - -
Cca02g00515 2234 Pfam Permuted single zf-CXXC unit 2053 2085 IPR028924 -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 1553 1573 - -
Cca02g00515 2234 SMART endo3end 1655 1827 IPR003265 GO:0006284
Cca02g00515 2234 MobiDBLite consensus disorder prediction 717 742 - -
Cca02g00515 2234 Pfam RRM in Demeter 2088 2188 IPR028925 -
Cca02g00515 2234 Gene3D - 1757 1845 IPR023170 -
Cca02g00515 2234 SMART ccc3 1828 1848 IPR003651 GO:0051539
Cca02g00515 2234 MobiDBLite consensus disorder prediction 1610 1624 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 598 626 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 1610 1649 - -
Cca02g00515 2234 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 722 2205 IPR044811 GO:0019104|GO:0035514|GO:0080111
Cca02g00515 2234 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 595 724 IPR044811 GO:0019104|GO:0035514|GO:0080111
Cca02g00515 2234 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 129 369 IPR044811 GO:0019104|GO:0035514|GO:0080111
Cca02g00515 2234 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 368 485 IPR044811 GO:0019104|GO:0035514|GO:0080111
Cca02g00515 2234 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 488 601 IPR044811 GO:0019104|GO:0035514|GO:0080111
Cca02g00515 2234 Coils Coil 1959 1979 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 219 234 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 235 250 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 472 487 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 284 302 - -
Cca02g00515 2234 Gene3D Hypothetical protein; domain 2 1666 1756 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 359 415 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 472 527 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 2209 2234 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 268 282 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 173 302 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 1471 1513 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 1339 1378 - -
Cca02g00515 2234 MobiDBLite consensus disorder prediction 587 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00515 Cca-Chr2 11012307 11026801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00515 - - pvu:PHAVU_007G223600g 3086.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00515 02 11012307 11026801 Cca02g00515 02 11012307 11026801 ECH
Cca03g02474 03 45892634 45903600 Cca02g00515 02 11012307 11026801 PCT