Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02468 ATGGATCGCCTTTCTTCCACTACCATTCTCCCCGAAGCGTTTGAAGGGGCCAAAGATGACCTCACCATGCAGCTTGCATTGGTTTGGAACCAAATCAAAGCGCCACTCATTGTCCCGTTGCTGAGACTAGCAGTGTTTCTGTGCTTGATCATGTCGGTCATGATGTTCATTGAGAGGGTTTACATGGGCATTGTCATCACTCTGGTGAAGTTGTTTGGCAAAAAGCCAGAGAAACGTTACAAATGGGAGCCAATGAAGGATGACATTGAGCTGGGAAACTCTTCTTATCCAATGGTCCTCGTTCAAGTCCCTATGTACAATGAAAGAGAGGTTTATCAGCTCTCAATTGGAGCTGCTTGTGGACTTTCTTGGCCTTCAGATAGGATCATCATACAAGTCCTTGATGACTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTTGAGTGCCAAAGATGGGCAAGCAAAGGGGTGAATATAAAGTATGAGGTTAGGGACAATAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGTAGCTACGTGAAACAGTGTGATTGCGTTGCTATCTTTGACGCTGATTTTCAACCAGAGCCTGATTTCTTGTGGCGCACCGTTCCATTCCTGGTGCACAATCCCGAGCTAGCCCTCATTCAAGCGCGGTGGAAATTTGTGAATGCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGTTTCAACGGAACTGCTGGAGTATGGAGAATTTCGGCTTTGAATGAAGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACCTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGGTTAAAAATGAATTGCCAAGTACATTCAAGGCATACCGCTACCAACAGCACCGTTGGTCATGCGGGCCAGCCAATCTCTTTAGGAAAATGGTCATGGAGATCATAAACAACAAGAAAGTGTCATTGTGGAAGAAGATACACGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTGGTAGCACACATCAACACGTTTGTGTTTTATTGCATTGTATTACCTTCAACAGTTTTGGTGCCTGAGGTGGTGGTCCCAAAGTGGGGTGCTGTCTATATCCCTTCCATCATCACCTTTCTAAATGCAGTTGGAACTCCAAGGTCACTTCATTTACTTGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTGCATCGAACAAAGGCAACGATTATTGGTCTACTAGAGGCTAGTCGAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGGCTAAAGCAGGAGGAAAAGCACTTAAAAAGCCAAGATTCAGAATTGGAGACAGGATTCACTTGTTAGAACTTGGTGTGGCATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTCGGGAAAAACCATTTCTTCATCTTCCTCTTTATCCAAGCATTTGCCTTCTTCATCATGGCATTTGGATATGTTGGCACCATTGTTCCCAACTCCTAG 1602 0.4476 MDRLSSTTILPEAFEGAKDDLTMQLALVWNQIKAPLIVPLLRLAVFLCLIMSVMMFIERVYMGIVITLVKLFGKKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIINNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPSTVLVPEVVVPKWGAVYIPSIITFLNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKAKAGGKALKKPRFRIGDRIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQAFAFFIMAFGYVGTIVPNS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02468 533 Pfam Glycosyltransferase like family 2 98 332 - -
Cca03g02468 533 PANTHER BNAC09G36340D PROTEIN 1 532 - -
Cca03g02468 533 PANTHER - 1 532 - -
Cca03g02468 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
Cca03g02468 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 374 IPR029044 -
Cca03g02468 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02468 Cca-Chr3 45787222 45792995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02468 1 532 Miscellaneous Gene Families AT5G03760 80.488 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02468 K13680 - gmx:100810016 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02468 03 45787222 45792995 Cca03g02468 03 45787222 45792995 ECH
Cca03g02468 03 45787222 45792995 Cca02g00513 02 10955308 10961493 PCT