Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00513 ATGGAAGCGTTTCAAGGGGCGAGGGATGACATTTCCTTCCAAATTGGCCTGATTTGGAGCCAAGTGAAGGAGCCAGTGATCGTGCCACTGCTGAGAGTGTCAGTGTTTCTGTGCTTGGCCATGTCTTTGATGATGCTGGTGGAGAGGGTGTACATGGGCTTCGTCATTTGCTTGGTCAAGCTCTTTGGTCGAAAACCCGAGAAGCGTTACAAGTGGGAGCCTATGAAGGACGACGTTGAGTTGGGAAATTCCATTTATCCAATGGTTTTGGTCCAAGTCCCAATGTACAACGAAAGAGAGGTTTATCAACTATCGATTGGTGCCGCATGTGGTCTTTCTTGGCCTTCAGACAGAATCATCATCCAAATTCTCGATGATTCTACTGACCCAACAATCAAGGAATTGGTGCAAATGGAATGTAGCAGATGGGCGAGCAAAGGGGTGAACATAAAGTACGAGGTGAGGGACAACAGAAACGGTTACAAAGCTGGGGCTCTTAAAGAAGGCATGAAACGCAGCTATGTGAAACAATGTGATTATGTTGCAATCTTTGATGCTGATTTTCAACCAGAGACTGATTTCCTATGGCGAACTGTCCCATTCCTTGTCAACAACCCTGAACTTGGTCTCGTTCAGGCACGCTGGAAGTTTGTGAATGCAAATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGCTTCAACGGGACTGCGGGTGTATGGAGAATTTCGGCTCTGAATGAGGCTGGGGGGTGGAAGGATAGGACCACAGTAGAAGATATGGACCTGGCTGTCCGAGCCAGTCTCAAAGGATGGAAATTCTTATACCTAGCCAATTTGAAGGTTAAAAATGAATTACCAAGTACTCTAAAGGCCTACCGGTACCAACAGCACAGGTGGTCTTGTGGACCAGCCAATCTTTTCAAGAAAATGTTCACGGAGATTATGAGAAACAAGAAAGTGTCCTTGTGGAAGAAGATATATGTGATTTACAGCTTCTTCTTTGTCCGGAAGGTCGTGGCCCACATCAACACTTTTGTGTTCTATTGCATTGTGTTACCTGCAACAGTTGTGGTGCCTGAGGTTGCGGTTCCCAAGTGGGGTGCTGTGTATATCCCTTCCATTATCACCCTCCTAAATGCTGTTGGAACTCCAAGGTCACTCCACTTACTGGTCTTCTGGATTCTTTTTGAGAATACCATGTCTCTGCATAGAACAAAGGCGACAATTATTGGTCTACTAGAGGCTAGTAGAGTGAATGAATGGATTGTCACTGAAAAGCTTGGAGATGCTCTAAAGGGTAAAGGTGGGGGTAAAGCACCCAAGAAGTTTCGATTCAAGATTGGAGAAAGGATTCACATGTTGGAACTTCTAGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATATCATGTTCGGCAAAAACCGCTTCTACATATTCCTATATATCCAATCAATTGCTTTCTTCATCATGGCATTTGGATATGTTGGCACTTTCGTTCCCAACTCCTAG 1572 0.4497 MEAFQGARDDISFQIGLIWSQVKEPVIVPLLRVSVFLCLAMSLMMLVERVYMGFVICLVKLFGRKPEKRYKWEPMKDDVELGNSIYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKELVQMECSRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDYVAIFDADFQPETDFLWRTVPFLVNNPELGLVQARWKFVNANECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLANLKVKNELPSTLKAYRYQQHRWSCGPANLFKKMFTEIMRNKKVSLWKKIYVIYSFFFVRKVVAHINTFVFYCIVLPATVVVPEVAVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATIIGLLEASRVNEWIVTEKLGDALKGKGGGKAPKKFRFKIGERIHMLELLVGFYLFFCGCYDIMFGKNRFYIFLYIQSIAFFIMAFGYVGTFVPNS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00513 523 PANTHER - 1 522 - -
Cca02g00513 523 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 79 302 IPR029044 -
Cca02g00513 523 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 1 522 - -
Cca02g00513 523 SUPERFAMILY Nucleotide-diphospho-sugar transferases 85 363 IPR029044 -
Cca02g00513 523 CDD CESA_CaSu_A2 87 323 - -
Cca02g00513 523 Pfam Glycosyl transferase family group 2 180 379 IPR001173 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00513 Cca-Chr2 10955308 10961493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00513 2 522 Miscellaneous Gene Families AT5G03760 79.119 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00513 K13680 - gmx:100782772 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00513 02 10955308 10961493 Cca02g00513 02 10955308 10961493 ECH
Cca03g02468 03 45787222 45792995 Cca02g00513 02 10955308 10961493 PCT