Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02462 ATGCATTCCAATCATTTGCTTATCGAGGAACCTATTCGTATGATTTCCATCCTCGAGCCATCCAAGGCCAGTTTTTTTCCCGCAATGACGAAGATCGTCGGTACCCTGGGTCCTAAATCTCGATCGGTCGAGGTTATTTCTGCTTGCCTCAAAGCTGGAATGTCTGTGGCTCGTTTCGACTTCTCTTGGTGTAACCCTGAATATCACCAAGAGACTTTGAACAATTTGAAGGATGCTGTCAAGACTACTAAGAAGCTCTGTGCTGTTATGATGGATACGGTGGGTGCAGAGATGCAGGTTGTTAACAAAAGTGAGACATCGATCTCGCTTGAGGCTGATGGTCAGGTTGTTCTGACTCCTGACCGGGGACAAGAAGCTTCTTCAGAGATACTGCCTGTCAATTTTGATGGATTGGCAAAGTCAATGAAGGAGGGAGACACCATTTTTATTGGTCAATACTTGTTCACAGGAAGTGAAACTACTTCTGTATGGCTAGAGGTGTCTGAAGTTACAGGGGATGATGTCATTTGTACCATAAAGAATTCGGCAACATTGGCTGGGTCATTGTTCACTTTGCATGCCTCTCAAGTTCATATTGACTTGCCTACTCTCACTGATAAAGACAAGGAGGTTATAAGCACCTGGGGAGTAAAAAACAAGATTGATTTTCTATCATTGTCATATACTAGGCATGCTGAAGATGTCCGCCAGGCCCGTGAATTCCTTTCTAAGTTGGGTGATCTAAGGGAAACTCAAATATTTGCAAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAAATTCTACAAGAAGCAGATGGTATTATCCTTTCCCGTGGGAATTTGGGCATTGATCTTCCCCCAGAGAAGGTATTTTTCTTTCAAAAATCTGCCCTCTACAAGTGTAATATGGCTGGGAAACCTGCTGTGCTTACACGCGTTGTGGATACAATGACTAACAACTTAAGACCAACTCGTGCAGAAGCCACTGATGTTGCCAATGCTGTTTTAGATGGAAGTGATGCAATACTTCTAGGTGCTGAGACTTTACGTGGGTTATACCCTGTGGAGACTATTTCTACAGTTGGCAAAATTTGTGCAGAAGCAGAGAAAGTTTTCAATCAAGACCTTTATTTTAAGAGAACTGTTAAATATGTTGGAGAACCCATGACCCACTTGGAATCTATTGCATCCTCAGCGGTGCGAGCAGCTATTAAGGTGAAAGCTTCTGTTATTATTTGCTTCACTTCATCTGGAAGGGCTGCAAGATTGATAGCAAAGTATAGGCCAACGATGCCGGTTATCTCTGTTGTGATCCCCCATCTCATGACAAATCAGCTGAAATGGAGCTTTAGTGGAGCTTTTGTGGCTAGGCAATCACTTATCGTAAGAGGCCTCTTTCCCATGCTCGCTGATCCCCGACATCCAGCCGAGTCAACAAGTGCCACAACTGAGTCTATTCTAAAGGTTGCCCTTGATCATGGAAAAGCATCAGGAGTTATAAAGTCACGGGATCGAGTAGTTGTTTGCCAGAAACTTGGTGATGCATCTGTGGTTAAGATTATCGAGCTTGAAGATTAA 1584 0.4324 MHSNHLLIEEPIRMISILEPSKASFFPAMTKIVGTLGPKSRSVEVISACLKAGMSVARFDFSWCNPEYHQETLNNLKDAVKTTKKLCAVMMDTVGAEMQVVNKSETSISLEADGQVVLTPDRGQEASSEILPVNFDGLAKSMKEGDTIFIGQYLFTGSETTSVWLEVSEVTGDDVICTIKNSATLAGSLFTLHASQVHIDLPTLTDKDKEVISTWGVKNKIDFLSLSYTRHAEDVRQAREFLSKLGDLRETQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFFFQKSALYKCNMAGKPAVLTRVVDTMTNNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVGKICAEAEKVFNQDLYFKRTVKYVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVISVVIPHLMTNQLKWSFSGAFVARQSLIVRGLFPMLADPRHPAESTSATTESILKVALDHGKASGVIKSRDRVVVCQKLGDASVVKIIELED 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02462 527 SUPERFAMILY PK beta-barrel domain-like 101 186 IPR011037 -
Cca03g02462 527 TIGRFAM pyruv_kin: pyruvate kinase 30 517 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 Gene3D - 30 362 IPR040442 -
Cca03g02462 527 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 PANTHER PYRUVATE KINASE 2 527 - -
Cca03g02462 527 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 Gene3D - 97 201 IPR015806 GO:0004743|GO:0006096
Cca03g02462 527 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 6 375 IPR015813 GO:0003824
Cca03g02462 527 Pfam Pyruvate kinase, alpha/beta domain 395 522 IPR015795 -
Cca03g02462 527 Gene3D - 363 525 IPR036918 -
Cca03g02462 527 PANTHER PYRUVATE KINASE 2 527 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca03g02462 527 SUPERFAMILY PK C-terminal domain-like 358 515 IPR036918 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02462 Cca-Chr3 45700944 45709835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02462 K00873 - gmx:100807864 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02462 03 45700944 45709835 Cca03g02462 03 45700944 45709835 ECH
Cca03g02462 03 45700944 45709835 Cca02g00538 02 11716928 11718680 PCT