Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00538 ATGAAAACTTTAGAGAATTTGAAGATTGCTGTCAAGAGTTCTAAGAAATTATTTGCTGTTATGCTGGACACGGTGGGTGCAGAGATGCAGGTTGTTAACAAAAGCGAGAAAGCAATCTCACTTGAGGCAAATGCTCAAGTTGTTCTAACTCCTGATCAGGGACAAGAAGCCTCTTTAGAAATATTGCCCATCAATTTTGATGGATTGGCAAAGGCAGTGAAGAAGGGGGACATTATTTTTATTGGACAATACCTGTTCACAGGAAAATATGATATTTCATTTTCATTTTGGGTTCCAGATTCAATCAGGATGTCATTATCTTTTATGTTATATATTCTTGATCTTGATAGGTTGAAACTACCAAATACTTCAGCGTAA 378 0.3624 MKTLENLKIAVKSSKKLFAVMLDTVGAEMQVVNKSEKAISLEANAQVVLTPDQGQEASLEILPINFDGLAKAVKKGDIIFIGQYLFTGKYDISFSFWVPDSIRMSLSFMLYILDLDRLKLPNTSA 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00538 125 Gene3D - 27 86 IPR015806 GO:0004743|GO:0006096
Cca02g00538 125 Gene3D - 2 26 IPR040442 -
Cca02g00538 125 SUPERFAMILY PK beta-barrel domain-like 32 83 IPR011037 -
Cca02g00538 125 PANTHER PYRUVATE KINASE 1 93 - -
Cca02g00538 125 Pfam Pyruvate kinase, barrel domain 2 82 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca02g00538 125 PANTHER PYRUVATE KINASE 1 93 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00538 Cca-Chr2 11716928 11718680 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00538 K00873 - gmx:100802271 152.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02462 03 45700944 45709835 Cca02g00538 02 11716928 11718680 PCT