Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02457 ATGGCGTCGAGACAGCAACTGAAGGAAGACAGAGCGGAGGCAGCGGCCAAGCTGGCGGCGAAGGACATCGGCGACATCAACAGAGCAAACGAGCGCGACGAGGGCTACACGCTCAACTCCGAGCTCAACTTCAAGCAGGCGCGAGCCGAGGCCGCCGCCAAGCTGGCCGCGAAGGACCTCGAGGACGTGAACAGAGCAAAAGAAAGCGCGTGTAGAGAGCCCCACGACGAGAACAAACCCGGTGTGATAGGGTCCATGTTTAGAGCGGTGCAGGGCACGTACGAGCACGCCAAAGAAGCCGTGGTTGGGAAGCCTCAGGAGACGGAGAAGGAGCGCTACTCGCCCGGGGTTTATGAGAAGGCGAAGGAAACTAAAGACGCGGCGGGGTCGAAGGTGGGAGAATATGCGGATTACGCGGGGCAGAAGGCGAGGGAGACGAAGGATGCGACGAAGCAGAAGGCCGGGGAGTATGCAGATTATGCTTCGCAGAAAGCGAAGGAAACGACGGAGTATGCTGGAGATAAGGCTAAGGAAGGGAAGGACGCTGCCACGGGGAAGCTTGGGGAGCTCAAGGACAGGGCCATGGGTTTCTTCACCGCCAAGAAAGACGAGCCACATGCACATGATAAGGTGGTGAGTGGAAGGGAGGAAGTGAGGGTGCAAGATGCGGTGGGGCGGGGAGGAGACAAGTTGGTCATAAAAATGGAGGAGTCTCGCCCGGGAGCCGTGGCGGATGCGCTCAAAGCGGCGGATAGGGCCATTGGCGGCCATGTCGAGGAGGAAGGGGCTGGTTCACCAAACAAGGCAAAAGCTGGCATTGAATGTCCGGTTCACCAAACTCTGCAAATGATCACTACACCTACAATTGCTGGATACACAATTGTTGTATTGTTTTGGCTCAGGTTTATACATAAATTTGAGGTATTGAAAAAGAATTGGGCGCCGGCGCCAGGCATGTCCACCAGAGGCTTCATCATCTATCTCCTAGCCTCTTTCTCCCTCGCGCTTCTCTCTGCGCTGTTCCTCACCAGAACCAACGACTACAAACATTATGTGTCCACGTCACCACCCTCCTCTCCTAATTATGGATCCGCAACCGATAAGAATTGGCCCGAATTGAAGGTGGGTTGGAGAGTTGCGTTGGCCACAGTTATTGGGTTTCTGGGATCTGCTTTTGGCACCGTTGGAGGGGTTGGCGGGGGAGGCATTTTCGTCCCCATGCTTACTCTCATTGTTCGTTTTGATACCAAGTCTGCTGCTGCTCTTTCTAAATGTATGATAATGGGGGCTTCAACAGCTTCCGTTTGGTATAACCTAAGAGTGCCTCATCCAACCAAAGAGGTGCCAATACTAGACTATGATCTCGCCCTTCTTTTCCAGCCCATGCTCATGCTTGGTATAACTGTTGGTGTCTCTCTTAGTGTTGTCTTCCCCTACTGGCTCATCACTGTTCTCATTATTATTCTCTTCATAGGTACCTCTTCAAGGTCTTTCTTTAAGGGAACTCAGATGTGGAAGGAAGAGACTCTTCTCAAGAAAGAAATGGCCAGACAACAAGATGCTTTTGTTAATTCTCGTGGAGAACTTCTAATTGGCACAGAATATGAGTCGTTGATTCCTAAAGAAGAGAAGTCATCTTTGCAAATTCTTTGTTTCAACCTCAAGTGGAAAAGGATTTTGATACTCATGGCCGTGTGGGTTTCTTTCCTATCACTTCAAATGATCAAGGCTAGCCTCTCTCTCTCTCCCACTCATGTCACAAGTCTGTTCACTTTTTGTTTCTTTATTTTAATTTTACTTGTTGATCTGCAGAATGATGTACAGGTCTGCGGTGTATGGTATTGGGTGCTTTTTTTCTTACAGTTTCCTATTGCACTCATTGTGTTTGGCTACGAAGCAGTGAAGTTGTACAAGGATCACAAAGAGAGAATGAGCACAGGGAACCCGGAATCCATCTGTGAGGCATCAATTGAATGGACTCCTTTGCACATTTTGTTTTGTGCACTATGTGGCATCTTAGGGGGAACTGTTGGAGGCCTACTTGGTTCGGGAGGTGGCTTCATTTTGGGCCCTCTTCTCATCGAAATTGGCGTCATCCCCCAGGTTGCTAGTGCAACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCTGTGGTGGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTACGCGTTATACCTCACCGCAGTGTCTGTTTTGGCTGGCTTTTGGGGACAATATTTTGTGAGGAAATTGATGGCAATTCTTAAAAGGGCCTCAATCATTGTATTCATCCTCTCAGCGGTCATTTTTGCTAGCGCTCTCACCATGGGTGTCGTTGGCATTGTCGAGAGCATTGAAATGATCAAAGACCACGAGTTCATGGGATTTTTAGACTTCTGTAGCAGTCAATGA 2421 0.4952 MASRQQLKEDRAEAAAKLAAKDIGDINRANERDEGYTLNSELNFKQARAEAAAKLAAKDLEDVNRAKESACREPHDENKPGVIGSMFRAVQGTYEHAKEAVVGKPQETEKERYSPGVYEKAKETKDAAGSKVGEYADYAGQKARETKDATKQKAGEYADYASQKAKETTEYAGDKAKEGKDAATGKLGELKDRAMGFFTAKKDEPHAHDKVVSGREEVRVQDAVGRGGDKLVIKMEESRPGAVADALKAADRAIGGHVEEEGAGSPNKAKAGIECPVHQTLQMITTPTIAGYTIVVLFWLRFIHKFEVLKKNWAPAPGMSTRGFIIYLLASFSLALLSALFLTRTNDYKHYVSTSPPSSPNYGSATDKNWPELKVGWRVALATVIGFLGSAFGTVGGVGGGGIFVPMLTLIVRFDTKSAAALSKCMIMGASTASVWYNLRVPHPTKEVPILDYDLALLFQPMLMLGITVGVSLSVVFPYWLITVLIIILFIGTSSRSFFKGTQMWKEETLLKKEMARQQDAFVNSRGELLIGTEYESLIPKEEKSSLQILCFNLKWKRILILMAVWVSFLSLQMIKASLSLSPTHVTSLFTFCFFILILLVDLQNDVQVCGVWYWVLFFLQFPIALIVFGYEAVKLYKDHKERMSTGNPESICEASIEWTPLHILFCALCGILGGTVGGLLGSGGGFILGPLLIEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLTAVSVLAGFWGQYFVRKLMAILKRASIIVFILSAVIFASALTMGVVGIVESIEMIKDHEFMGFLDFCSSQ 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02457 806 PANTHER CEREBLON 592 805 - -
Cca03g02457 806 PANTHER CEREBLON 319 599 - -
Cca03g02457 806 MobiDBLite consensus disorder prediction 98 126 - -
Cca03g02457 806 Pfam Late embryogenesis abundant protein 118 157 IPR004238 -
Cca03g02457 806 Pfam Late embryogenesis abundant protein 158 196 IPR004238 -
Cca03g02457 806 MobiDBLite consensus disorder prediction 100 126 - -
Cca03g02457 806 MobiDBLite consensus disorder prediction 63 83 - -
Cca03g02457 806 Gene3D - 145 202 - -
Cca03g02457 806 PANTHER TRANSMEMBRANE PROTEIN TAUE-RELATED 592 805 - -
Cca03g02457 806 PANTHER TRANSMEMBRANE PROTEIN TAUE-RELATED 319 599 - -
Cca03g02457 806 MobiDBLite consensus disorder prediction 63 79 - -
Cca03g02457 806 Pfam Sulfite exporter TauE/SafE 384 508 IPR002781 GO:0016021
Cca03g02457 806 Pfam Sulfite exporter TauE/SafE 616 771 IPR002781 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02457 Cca-Chr3 45653899 45662838 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02457 - - gmx:100807336 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02457 03 45653899 45662838 Cca03g02457 03 45653899 45662838 ECH
Cca03g02457 03 45653899 45662838 Cca02g00500 02 10642577 10644723 PCT