Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00500 ATGGCGTCAAAGCAACAGCAACGGGAGGATCGAGCCGAGGCAGCTGCAAAACAAGCTGCCAAAGACCTGGAGCAAGCCAACAGAGAAAGAGACCACACTACAAGCTCCGTGGACCAGCACCACCATGACCTCGATGAACAAAAGCGCGGCGTAATCGGGTCCATGCTAAGAGCGGTGCAAGGCACCTACGAGAACGCCAAGGAAGCCGTGGTTGGTAAGAGAGACCCCTACACCACAGAGGTAATCCACGATGTCACCATCCAACCCGACCATGACGTGGCAACCGGAGAAGTCAGAGACATTTCAGCCACCAAGTCCCCCGGAATCTACGACTCTTCTGCCACTGACAAGGATCCTGCTTCTCAGAAGGCAAAGGAAACCAAAGATGCAACGGCACAGAAAGCTGGAGAGTACACAGATTATGCTTCACAGAAGGCCAAGGAAGCGAAAGATGCAACGGCGCAGAAAGCTGGAGAGTACACAGACTATGCTTCTCAGAAGGCAAAGGAAACCAAAGATGCAACGGCGCAGAAAGCTGGAGAGTACACAGACTATGCTTCTCAGAAGGCGAAGGAAACGAAAGATGCAACGGCGCAGAAGGCTGGAGAGTATTCAGATTATGCTTCTCAGAAGGCGAAGGAGGCGAAGGATAAGACCATGGAGAAGGGTGCAGAGTATAAGGACTATGCTGCTGAGAAGGCTAAAGAAGGGAAAGACAGCACTATGGGGAAGCTTGGGGAGCTGAAGGAATCTGCTACGGAAGCGGCTAAGAGGGCTGTGGATTACTTGAGTGGGAAGAAAGAGGAAACCAAGGAGAAGGCGGCGGAGGCCACGGAGGCCGCCAAGGATCGAACCGCCACGGCGACGGAGGCGGCGAAGAATAAAGCTGTGGAGATGAAGGACAAGGCTGCGGATACTGCTGAGGCAGCGAAGAACAAGGCTGCGGAGACAGCTGAGGCAACAAAGAACAAGGCTGCAGAGAAAAATGAGGAAGCGAAGAACAAGAGAGCTGAAACTGCCGAGGCAACAAAGAACAAGACTGCGGAGACTACTGAGGCAGCCAAGAATAAGGCTATAGGGATGAAGGATGCAGCTAAGAACAAGGCCTCAGAAACTGCTGAGGCAGCAAAACAGAAGACTgcagaggcaaaggcaaatgataaggccaagGAAAATGTGAGAGGTGCAGATGAAGGTGCTAGGAGGAAGATGGAGGATCTGAGGCTGGGAGGTGAAGCCAAGGGGCGTGGGGACAACGTGGTGGTGAAAGTGGAAGAGAGTCGACCAGGGGCGGCGGCGGAGACACTTAAAGCGGCGGATCAGATTGCGGGACAGACCTTCAACGATGTGGGACGCATGGATCAAGAGGGGGTCGCCAAAGTTGAGCGCCGTAACAAATGA 1401 0.5239 MASKQQQREDRAEAAAKQAAKDLEQANRERDHTTSSVDQHHHDLDEQKRGVIGSMLRAVQGTYENAKEAVVGKRDPYTTEVIHDVTIQPDHDVATGEVRDISATKSPGIYDSSATDKDPASQKAKETKDATAQKAGEYTDYASQKAKEAKDATAQKAGEYTDYASQKAKETKDATAQKAGEYTDYASQKAKETKDATAQKAGEYSDYASQKAKEAKDKTMEKGAEYKDYAAEKAKEGKDSTMGKLGELKESATEAAKRAVDYLSGKKEETKEKAAEATEAAKDRTATATEAAKNKAVEMKDKAADTAEAAKNKAAETAEATKNKAAEKNEEAKNKRAETAEATKNKTAETTEAAKNKAIGMKDAAKNKASETAEAAKQKTAEAKANDKAKENVRGADEGARRKMEDLRLGGEAKGRGDNVVVKVEESRPGAAAETLKAADQIAGQTFNDVGRMDQEGVAKVERRNK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00500 466 MobiDBLite consensus disorder prediction 141 155 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 1 52 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 118 133 - -
Cca02g00500 466 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 386 461 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 315 351 - -
Cca02g00500 466 Coils Coil 2 36 - -
Cca02g00500 466 Coils Coil 366 386 - -
Cca02g00500 466 PANTHER DAUER UP-REGULATED-RELATED 386 461 - -
Cca02g00500 466 PANTHER DAUER UP-REGULATED-RELATED 1 311 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 1 50 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 207 280 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 163 177 - -
Cca02g00500 466 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 1 311 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 286 309 - -
Cca02g00500 466 Pfam Late embryogenesis abundant protein 206 248 IPR004238 -
Cca02g00500 466 Pfam Late embryogenesis abundant protein 117 160 IPR004238 -
Cca02g00500 466 Pfam Late embryogenesis abundant protein 161 204 IPR004238 -
Cca02g00500 466 Gene3D - 265 321 - -
Cca02g00500 466 Gene3D - 115 161 - -
Cca02g00500 466 Gene3D - 162 206 - -
Cca02g00500 466 Gene3D - 207 262 - -
Cca02g00500 466 Coils Coil 300 345 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 359 416 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 185 199 - -
Cca02g00500 466 MobiDBLite consensus disorder prediction 88 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00500 Cca-Chr2 10642577 10644723 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00500 - - ccaj:109795465 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00500 02 10642577 10644723 Cca02g00500 02 10642577 10644723 ECH
Cca03g02457 03 45653899 45662838 Cca02g00500 02 10642577 10644723 PCT