Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02456 ATGGGTGGTAGTGGTGTTAGATGGGGTCAAGACTCATCTTCATCCATGAAGCTCTTGTGGTTCATGGTGCCACTTGTACTCGTTGCAGGCCTTATTTCTATATTTGGTCCTAACCCTGCTACTTGGCTTTTCTTTGCAAATCCACCTCTCTTATTCAACTCTGTTACTTCCTCTTCTTCAACTACCCCGTCTGAGGTGATGCAGAGAGAAGGCTTGGTGGTGGTGGCCGTGGATGCTCACGGTGGCGAGAGAGTTATCTCCGATGACACTGACTTCAATCACTCCTCCACTCCTCCATTTTCTGTTCAGGCCATACCAACACCTCAACAACATAACAAGGATGAACAAAATATTTCCCTAATTTTGCCCAATTTGACTCCCGTGAACGAGTCATATGTTCCTCCACCAGAGAGGCCAAAGCTGCAAAGAAAATTCAGCATCTTAGATAGAACCGAAGCTGGTCTATTACAAGCACGAGCTGCAATTAGAAAAGCAAGAAACGAAAATCAAACACAAGATAAAGACTATGTTCCGGTTGGACCAATGTATAACAATGCTAATGCATTTCACAGGAGTTACTTAGAAATGGAGAAACAGTTCAAAGTATTTGTCTACGAAGAAGGGGAGCCTCCAGTTTTCCACAATGGACCATGCAAAAGCATATACTCAATGGAGGGAAATTTCATCCATGCTATTGAGATGAATGAGCAATTCCGAACAAGGGATCCCGAGAAAGCACATGTGTTTTTCTTACCTTTTAGTGTAGCAATGTTGGTCCAATTTGTGTACGTACGTGACTCTCATGACTTCGGCCCCATAAAAAAAACTGTCACGGACTATGTCAACGTCATTGCAGGAAAATATCCCTATTGGAACCGAAGCCTTGGTGCTGATCATTTCTACATTGCATGCCATGATTGGGGGCCAGAGACTTCACGTTCCGTTCCTAACTTGCAAAACAATTCGATCCGTGTGCTGTGTAATGCTAACACCTCTGAGGGATTCAAGCCTTCAAAGGATGTCTCTTTCCCAGAAATCAATCTCCAAACGGGTTCAATAAACGGTTTCATTGGTGGGCCGTCTGCGTCTAGACGTTCACTTTTGGCCTTCTTTGCTGGTGGGCTTCACGGCCCAATTAGGCCCGTTCTTCTTGAACACTGGGAAAACAAGGACCAAGACATGCGGGTTCACAAGTACCTCCCGAAGGGTGTGTCCTACTACGATATGCTGAGGAAGAGCAAGTTCTGTCTTTGTCCTAGTGGGTACGAGGTGGCGAGTCCCAGAGTTGTCGAGGCAATATACACAGGGTGCGTCCCAGTGCTCATTTCGGACCATTATGTCCCTCCGTTCAGTGATGTTTTGAATTGGAAGTCCTTTTCCGTTGAGGTTTCGGTGGAGGACATTCCCAAATTGAAGGACATTCTCTTGAGTATTTCTCCGAGGCAGTATATAAGAATGCACAGGAGAGTGGTGCAAATTAGGAGGCACTTCGAGGTGCATTCTCCTCCCAAGAGATACGATGTGTTCCATATGATCCTTCATTCTGTTTGGCTTAGAAGATTGAACTTTAGAGTCCATGATGATCAATAA 1590 0.4509 MGGSGVRWGQDSSSSMKLLWFMVPLVLVAGLISIFGPNPATWLFFANPPLLFNSVTSSSSTTPSEVMQREGLVVVAVDAHGGERVISDDTDFNHSSTPPFSVQAIPTPQQHNKDEQNISLILPNLTPVNESYVPPPERPKLQRKFSILDRTEAGLLQARAAIRKARNENQTQDKDYVPVGPMYNNANAFHRSYLEMEKQFKVFVYEEGEPPVFHNGPCKSIYSMEGNFIHAIEMNEQFRTRDPEKAHVFFLPFSVAMLVQFVYVRDSHDFGPIKKTVTDYVNVIAGKYPYWNRSLGADHFYIACHDWGPETSRSVPNLQNNSIRVLCNANTSEGFKPSKDVSFPEINLQTGSINGFIGGPSASRRSLLAFFAGGLHGPIRPVLLEHWENKDQDMRVHKYLPKGVSYYDMLRKSKFCLCPSGYEVASPRVVEAIYTGCVPVLISDHYVPPFSDVLNWKSFSVEVSVEDIPKLKDILLSISPRQYIRMHRRVVQIRRHFEVHSPPKRYDVFHMILHSVWLRRLNFRVHDDQ 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02456 529 PANTHER EXOSTOSIN FAMILY PROTEIN 95 526 - -
Cca03g02456 529 Coils Coil 148 175 - -
Cca03g02456 529 Pfam Exostosin family 197 476 IPR040911 -
Cca03g02456 529 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 95 526 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02456 Cca-Chr3 45644937 45648298 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02456 - - gmx:100806278 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02456 03 45644937 45648298 Cca03g02456 03 45644937 45648298 ECH
Cca03g02456 03 45644937 45648298 Cca02g00499 02 10598672 10605312 PCT