Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02453 ATGTTCAAGATGGAAAACACAACATCAAAGCATGAGGTCCTAAAGCCAGTGATCCTCAAAGCTGGTGTTCCTTTGGCTGTGTCTTTCGCTGGTTGCATTTATGCTTGGTTCGTGGCAAAGAAAAGCCTCTCTAAAGCCTCTTCTATATCCAGTTCCCAACATGAGTCTAAATATGAAGAGAGTTGTGATAGTCATAGTCATAGCCTCTCTTCTTGTATGGAAGATGAAGGACATAGTGTTGTTGCTGAAAGCTCTATGATCCATGACACCCCTTGTTTAAAAGAGGAGATTAATGGCTTAAGAAGCAGGATTGAAGGTATGCAAATGAAAGAGTTGGCCTTGAGATTGCAGTTTGATCGTTATTGTGATTTGAAAGAACAAGAAAGTGTGGTTGGGGAGATCAAAAACATGTTGTCACTAGAGACTGCTCGTGTTGACTTATTGGATAGGGAGATTTCATCGATGGAGACACAGAATAGGAGGTTGGAGAGTTTTGTTGTTCAATATCTCAGAGTTGTGGAACAGATTGAGATGTGCAAATCTGAGAATAGAATGCTTCGGAGGAAGTTTGAGAAGTTAGTGAGGAAATCAAAGGCTCAAACTCGCTTGGCACAGGAACAGGCTCTGAAGATCAAAGTGGAAGAGGCAGAAATCTTGAGAAGCCGTGATGATTTGGAAACAAAAATTAATGTGATAGGTAAACTTGAGGAAAAAATGGAAGAGCTGCAAAGGACTTTGGATCAATTGCAGGTTGAGAAGAATGAACTTCTGAAGAAGCTTGACATTGCAGAAAAATCATATGCTTCTAAGATTGAAGCTGGAGATGTGAGTAGGGAAGAGTACAAACAGCTTCTGGATGAATTGGAGAAGGTCAAGAAGGAACGAGCAGATGAAGCTAAAGAACTCATTTACTTGAGGTGGACCAATGCTTGTTTGAGGCATGATCTAATGAGGCATCATGAACAGAAACAGAATCATGATATAACCCATATAGAATTGGAATTTGGAAGAAGTGATGAAGTTATCCATTATGACTCAGAACATGAATTGCACAATTCCATTTTGGAGGAACATCATAGTGATCCTGCCTTTGATGAGCATCCTAGTGGCCATGATCATAGTGACAGTGCTTGTTCAAAAAGGACAAAGTTGCTTGAAAGGCTAAAGAGGTGGGTGGAAGGCAGTGAAAAAGGGAGAGTTAGGCATTCTGTTTCCAAAGGGTCAGCAGAGGAACATCTAGTTCCTAGAAGGAGGTCTTGCTCTAGTGCTTGA 1272 0.4088 MFKMENTTSKHEVLKPVILKAGVPLAVSFAGCIYAWFVAKKSLSKASSISSSQHESKYEESCDSHSHSLSSCMEDEGHSVVAESSMIHDTPCLKEEINGLRSRIEGMQMKELALRLQFDRYCDLKEQESVVGEIKNMLSLETARVDLLDREISSMETQNRRLESFVVQYLRVVEQIEMCKSENRMLRRKFEKLVRKSKAQTRLAQEQALKIKVEEAEILRSRDDLETKINVIGKLEEKMEELQRTLDQLQVEKNELLKKLDIAEKSYASKIEAGDVSREEYKQLLDELEKVKKERADEAKELIYLRWTNACLRHDLMRHHEQKQNHDITHIELEFGRSDEVIHYDSEHELHNSILEEHHSDPAFDEHPSGHDHSDSACSKRTKLLERLKRWVEGSEKGRVRHSVSKGSAEEHLVPRRRSCSSA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02453 423 PANTHER CHUP1-LIKE PROTEIN 4 423 - -
Cca03g02453 423 MobiDBLite consensus disorder prediction 396 417 - -
Cca03g02453 423 MobiDBLite consensus disorder prediction 360 379 - -
Cca03g02453 423 Coils Coil 176 196 - -
Cca03g02453 423 MobiDBLite consensus disorder prediction 396 423 - -
Cca03g02453 423 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 4 423 IPR040265 -
Cca03g02453 423 Coils Coil 225 266 - -
Cca03g02453 423 Coils Coil 274 301 - -
Cca03g02453 423 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02453 Cca-Chr3 45610827 45613334 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02453 - - gmx:100805210 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02453 03 45610827 45613334 Cca03g02453 03 45610827 45613334 ECH
Cca03g02453 03 45610827 45613334 Cca02g00497 02 10545837 10547862 PCT