Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00497 ATGGGACTCACACCGCTCAAACCACTTATCCTCAAAGGTGGTGTTCCCTTGGCTGCATCTTTGGCTGGTTTGATCTATGCATGGATCATTGCAAAGAAAACCTGGTCTACCAAAGTTTCCTCTTTACCACAAAACGAGTGTGATGATTCTCCAAAAACCAAACATGAAGAAAGTTTTAACAACCTTTCTTTTGTGGAAGATGAAGATTCATCTAGCAGTGTTCTTTCTGGGAGCTTGGTGATCCATGAAAACAACAACAACCCTTGTTTGGAGAAAGAGATCATCACTTGCCTCAGAACACAAGTTGAGGGTCTTCAAATGAGGGAATTGGCCTTGCGTTTGCAATTTGAGTTGTACTGTGAAATGAAGGAGCAAGAGTCTCTTCTTGCTGAAGTGAAGAACAAGTTGTCTTTGGAGAATGATCGTGTTGAGATCTTGAGTAAAGAGATTTCGTCCATAGAGACCGAGACCATGAGGTTGGAGAGTTTTGTGGTGCAATACACGATGGTTGTTGAGCAACTTGAGTATTGGAAATCGCAGAATAGGGTGCTACAAAGGAGGGTGCAGAAGCTGGTTAGGGAAGTGAAGGCCAAATCAAGGTTGATAAAGGGTCAGGCTTTGAAGATCAAAGAGAAAGAAGAAGAAATATTGAGAAACAATGATGAGTTGCAAACAAGGGTCAGTGTGATCAACAAGTTAGAGGATGAAGTGAAAGAGCTACAAAGGGTTTTGGATCAATTAGAGGATGAGAAGAATGAGGTTTTGAAGAAGCTTGAAACAGCAGAAGAATATGCATCTCCGTTACACAAGGAAAAAATTCATAGAAAGCCTTTGAAATATTACTTGGAGGTTGAATCAGGTGGTGTGAGTAAGGAGGATTACAACAAGGTTCTCAATGAATTGGAAGAGGTCAAGAAGGAACGTGCAAATGAAGTTGAAGAGTTGGTTCATTTGAGGAGTATCAATGCTTGCTTAAGGGAGGAGTTAGTGAGGTACTATGAGGAACATCAAGAGCATGTTGAGGTGGAATTTGAAGGAAGCTTAGGAGTTGTGCAGAGTGAGTCAGAGCATGAATTGCATCATTCCCTTTTGGAGCATCACACTGGTTCAGCTCATGGTGATTCCAAAAGGAGAAAGTTGCTCAAGAGGCTAAAGAGGTGGGTTGAAGGAGGTGAAAAGGTAAGAGTGAAGCCTGAAATTAAGGGCATTGATGAAGGGCATCCTGTTTCCGATGGATCAAACAAACATGTAGTTCTTGCAAATTCAAGGTTCTGCTCTAGTGCTTGA 1287 0.4172 MGLTPLKPLILKGGVPLAASLAGLIYAWIIAKKTWSTKVSSLPQNECDDSPKTKHEESFNNLSFVEDEDSSSSVLSGSLVIHENNNNPCLEKEIITCLRTQVEGLQMRELALRLQFELYCEMKEQESLLAEVKNKLSLENDRVEILSKEISSIETETMRLESFVVQYTMVVEQLEYWKSQNRVLQRRVQKLVREVKAKSRLIKGQALKIKEKEEEILRNNDELQTRVSVINKLEDEVKELQRVLDQLEDEKNEVLKKLETAEEYASPLHKEKIHRKPLKYYLEVESGGVSKEDYNKVLNELEEVKKERANEVEELVHLRSINACLREELVRYYEEHQEHVEVEFEGSLGVVQSESEHELHHSLLEHHTGSAHGDSKRRKLLKRLKRWVEGGEKVRVKPEIKGIDEGHPVSDGSNKHVVLANSRFCSSA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00497 428 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 6 428 IPR040265 -
Cca02g00497 428 PANTHER CHUP1-LIKE PROTEIN 6 428 - -
Cca02g00497 428 Coils Coil 206 226 - -
Cca02g00497 428 Coils Coil 291 321 - -
Cca02g00497 428 Coils Coil 230 264 - -
Cca02g00497 428 Coils Coil 174 194 - -
Cca02g00497 428 Coils Coil 122 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00497 Cca-Chr2 10545837 10547862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00497 - - gmx:100819954 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00497 02 10545837 10547862 Cca02g00497 02 10545837 10547862 ECH
Cca03g02453 03 45610827 45613334 Cca02g00497 02 10545837 10547862 PCT