Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02449 ATGCGGGGTTATGTTCCCGTGTTGCTGGCGTTAGCCACCGTGGTGGCGTGCGGCGGTTTGGCGGGGACTATTCTTCCTCTGGAACGAGCCATTCCTCTGAACCAAAGAGTGGAACTGGAGGCGCTCAGAGCTCGCGACAGAGCACGCCACGCTCGAATCTTGCAAGCCGTGCCTGCTGGCGTTATTGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTCCGTTGGGTACGGGTTGTATTTCACGAAAGTGAAGTTGGGATCTCCTGCAAAAGAGTTTAACGTTCAGATTGATACGGGAAGTGACATCTTGTGGCTAAATTGCATTACTTGCAGTAATTGCCCGCAATCTAGTGGGTTGGGGATTCAGCTCAATTTCTTTGACACAGCTGGCTCATCCACTGCTGCACTTGTTTCCTGTGAAGACCCGGTGTGTTCTTATGCGGCTCAACTTCAAACTGCAACAAGTGAATGCTCTTCTCAGGCTAATCAGTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACAATGTATTTTGACATGATCCTGGGACAGAATTTGTTTTCTAACTCTTCACCTGGCATTGTCTTTGGGTGTAGCACCTATCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCCGGTGCTCTATCTGTTATATCACAATTGTCATCACGGGGAGTAACACCCAAAGTATTCTCTCATTGCTTAAAAGGAGAAGAAAATGGAGGAGGCGTACTAGTTTTTGGTGAAATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCTCAATTGATCCAAATGTATTTGCAACAGCCAACAATCGAGGAACTATAGTGGACTCTGGCACAACGTTGGCATACCTCGTTCAAGAAGCTTATGATCCTTTTGTCAGGGCTATAACCGATGCTGTGTTACAGTTTTCGAAACCCATAACATCAAAAGGCAACCCGTGCTATCTGGTATCAAACAGCGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTTATGGGTGGAGCATCTATGGTTTTAAATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATTGGCTTCCAAAAAGTAGAGGAGGGATTCTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTGGAAAATCAACGAATTGGATGGGCAAATTATGATTGTTCCTTGTCTGTTAACGTCACTGTGGCTACGAGCAAGAGCAAGGATGCATACATCAACAATTCAGGGCAGATGAATGTGAGCTGCTCCCACATAGGCACTTTCTCCAAGTTGCTAGCTGTAGGCATTGCTGTTTTCCTTGTGCACATAATAGTTTTCATGGGGTCCTAA 1488 0.4462 MRGYVPVLLALATVVACGGLAGTILPLERAIPLNQRVELEALRARDRARHARILQAVPAGVIDFSVQGTSDPYSVGYGLYFTKVKLGSPAKEFNVQIDTGSDILWLNCITCSNCPQSSGLGIQLNFFDTAGSSTAALVSCEDPVCSYAAQLQTATSECSSQANQCSYTFQYGDGSGTTGYYVSDTMYFDMILGQNLFSNSSPGIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGEENGGGVLVFGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLSIDPNVFATANNRGTIVDSGTTLAYLVQEAYDPFVRAITDAVLQFSKPITSKGNPCYLVSNSVGDIFPQVSLNFMGGASMVLNPEHYLMHYGFLDGAAMWCIGFQKVEEGFSILGDLVLKDKIFVYDLENQRIGWANYDCSLSVNVTVATSKSKDAYINNSGQMNVSCSHIGTFSKLLAVGIAVFLVHIIVFMGS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02449 495 CDD pepsin_A_like_plant 80 440 IPR034161 -
Cca03g02449 495 Pfam Xylanase inhibitor C-terminal 285 436 IPR032799 -
Cca03g02449 495 Pfam Xylanase inhibitor N-terminal 80 267 IPR032861 -
Cca03g02449 495 Gene3D Acid Proteases 269 447 IPR021109 -
Cca03g02449 495 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Cca03g02449 495 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Cca03g02449 495 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Cca03g02449 495 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 458 - -
Cca03g02449 495 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cca03g02449 495 Gene3D Acid Proteases 63 268 IPR021109 -
Cca03g02449 495 ProSiteProfiles Peptidase family A1 domain profile. 80 436 IPR033121 -
Cca03g02449 495 SUPERFAMILY Acid proteases 75 443 IPR021109 -
Cca03g02449 495 PANTHER ASPARTYL PROTEASES 9 458 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02449 Cca-Chr3 45552273 45559078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02449 54 441 Miscellaneous Gene Families AT1G44130 27.561 6.14e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02449 - - gmx:100804147 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02449 03 45552273 45559078 Cca03g02449 03 45552273 45559078 ECH
Cca03g02449 03 45552273 45559078 Cca02g00494 02 10525058 10530813 PCT