Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00494 ATGTCTCTTTCCATCTTTTTGGATCTTGCCGTACCCGCCGTGCTGGTGTCGGCGGTGGGCGGCGTTTTCCTCCCTCTGGAGCGGAGCATTCCTCCGAGCCACCGCGTGGAGCTGGCGGCGCTGAGGGCCCGCGACAGAGTCCGCCACGCCCGAATGCTGCGCGGCGTGGTCGACTTCTCAGTCGAAGGCACCTCCGATCTATCCCTTGGGTTCGGGTTGTATTTTACCAAAGTGAAGATAGGAACTCCTCCGAAAGAATTCAACGTTCAGATTGATACGGGAAGTGACATATTGTGGGTTAATTGCAACACTTGCAGTAATTGCCCTCAGTCTAGTCAACTAGGGATTGTGCTCAATTTCTTTGACACAGTTGGCTCGTCCACCGCTGCGTTGGTTCCGTGCTCGGACCCGATATGCACTTCTGGGGTTCAAGGTGCTGCTGCTGAGTGCTCCCCCCGGGTTAATCAGTGCAGCTACACATTTCAGTATGGAGATGGGAGTGGGACATTTGGTTATTATGTATCAGATGCAATGTATTTTGACATGATCATGGGACAGTCTCCACCGGCTAACTCTTCGGCTACCGTTGTTTTTGGGTGTAGCACCTATCAGTCTGGAGATTTGACTAAGGCAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTCTCTGTTGCATCTCAATTGTCTTCACGGGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTAGTCCCATCACAGCCTCATTACAATTTGAATCTTCAGACTATTGCTGTCAATGGGCAACTCCTCCCCATTAATCCAGCTGTATTTGCAACCTCTAACAACCGAGGAACTATAGTTGACTGTGGTACAACATTGGCGTATCTTGTTCAAGAAGCTTATGATCCTCTTGTCACTGCCATAACTACTGTCGTGTCACAATTTGCTAGGCAAACTATTTCCAAAGGAAACCAGTGTTATCTGGTTTCAACCAGCATAGATAACATTTTTCCTTCAGTCAGTTTCAATTTTGCTGGTGGAGCATCAATGGTTTTAAAACCAGAGCAGTACCTTATTCATAGTGGTTACCTTGATGGTGTTGCAATGTGGTGCATCGGTATCCAGAAAGTGCAGGAGGGCGTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTGTATGACTTAGCTCATCAACGAATTGGATGGGCTAACTATGACTGTTCTTTGTCTGTAAATGTTTCCGTGACTACAAGCAAGGATGAGTACATCAATGCGGGACAAATAAGTGTCAGCAGCTCTAATTTTTGCAGTTTTTATAAGTTACTGCATGTAAGCATTGTGTCTCTCTCTTTGTACATAGTGTTGGTGTGA 1446 0.4613 MSLSIFLDLAVPAVLVSAVGGVFLPLERSIPPSHRVELAALRARDRVRHARMLRGVVDFSVEGTSDLSLGFGLYFTKVKIGTPPKEFNVQIDTGSDILWVNCNTCSNCPQSSQLGIVLNFFDTVGSSTAALVPCSDPICTSGVQGAAAECSPRVNQCSYTFQYGDGSGTFGYYVSDAMYFDMIMGQSPPANSSATVVFGCSTYQSGDLTKADKAVDGIFGFGPGALSVASQLSSRGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQTIAVNGQLLPINPAVFATSNNRGTIVDCGTTLAYLVQEAYDPLVTAITTVVSQFARQTISKGNQCYLVSTSIDNIFPSVSFNFAGGASMVLKPEQYLIHSGYLDGVAMWCIGIQKVQEGVTILGDLVLKDKIVVYDLAHQRIGWANYDCSLSVNVSVTTSKDEYINAGQISVSSSNFCSFYKLLHVSIVSLSLYIVLV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00494 481 Pfam Xylanase inhibitor N-terminal 74 259 IPR032861 -
Cca02g00494 481 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 450 - -
Cca02g00494 481 SUPERFAMILY Acid proteases 70 435 IPR021109 -
Cca02g00494 481 CDD pepsin_A_like_plant 74 432 IPR034161 -
Cca02g00494 481 Pfam Xylanase inhibitor C-terminal 277 428 IPR032799 -
Cca02g00494 481 Gene3D Acid Proteases 59 260 IPR021109 -
Cca02g00494 481 PANTHER ASPARTYL PROTEASES 13 450 IPR001461 GO:0004190|GO:0006508
Cca02g00494 481 ProSiteProfiles Peptidase family A1 domain profile. 74 428 IPR033121 -
Cca02g00494 481 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Cca02g00494 481 PRINTS Pepsin (A1) aspartic protease family signature 307 318 IPR001461 GO:0004190|GO:0006508
Cca02g00494 481 PRINTS Pepsin (A1) aspartic protease family signature 404 419 IPR001461 GO:0004190|GO:0006508
Cca02g00494 481 Gene3D Acid Proteases 261 439 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00494 Cca-Chr2 10525058 10530813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00494 71 433 Miscellaneous Gene Families AT1G44130 28.682 4.37e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00494 - - gmx:100820394 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00494 02 10525058 10530813 Cca02g00494 02 10525058 10530813 ECH
Cca03g02449 03 45552273 45559078 Cca02g00494 02 10525058 10530813 PCT