Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02443 ATGTCTCCTGCAATGGCACTAAACGAGCAAAAGAGCAAGGATGATATAGCAGAAAGTCAATATCAGAAAGGAGTGAAGCATCTGTGTGAGAAAGGCCATCTTCACGAGGTTCCTAAGAAGTACATACTTCCTGCTTCCGAGAGACCCACAAAGAGTGTGGAAGATCCAAATGTTGCAAAGCAAAACCTTCAATTACCCATCATTGATTATGCCGAATTGCTTGGTCCAAATAGGCCACAAGTCCTAAAATCCCTAGCCAATGCTTGTCAACAGTATGGATTTTTCCAGCTGGTAAATCCTTGCATCTCGGATGATGTTGTAAGGAGCATGATAGATGTGAGTGGGAGGTTCTTCGATCTGCCTCTGGAAGAGAGAGCTAAGTACATGACAACTGATATGCGAGCACCGGTTCGATGTGGGACCAGCTTCAGCCAAACCAAGGACACTGTGTTGTGTTGGAGGGATTTCTTGAAGATCTTGTGTCATCCCTTGCCAGATTTCTTGCCCCATTGGCCTACTTCCCCAGTGGACTTTCGGAAAGTGGTGGCCACCTACGCAGAAGAAACCAAACACTTGTTCCTGGTGGTAATGGAAGCCATCCTAGAGAGCTTAGGAATCATGGAAACAAAGCAAGAACTAGAAGAGTTTGGCAATGGGAGCCAGATGATGGTGGCAAATTTctacccaccatgccctcaacctgaccttaccttaggtatgcctcctcactctgactatggcttcctcacacttctccttcaagacgaggttgaaggcttgcaaatcttataccaagacaaatgggttaccgttcaacccattcccaacgccttcgttatcaatgttggtgatcacttagagATATATAGCAATGGAAAATACAAGAGTGTATTGCATAGAGTTCTGGTGAATGAATTTAAGAGTAGGGTGTCGGTGGCTTCGCTGCATAGCCTTCCCTTCAACTGCACGGTGAAACCGTCGCCAAAACTCGTCGACGAAGCGAATCCGAAGCGTTACATGGACACAGATTTTGGGAGCTTTCTTGCGTACGTATCCAGCAGAGAGTCCAATAAGAAGGATTTTCTGGAGTCTAGAAAGTTGAAATATTGA 1110 0.3784 MSPAMALNEQKSKDDIAESQYQKGVKHLCEKGHLHEVPKKYILPASERPTKSVEDPNVAKQNLQLPIIDYAELLGPNRPQVLKSLANACQQYGFFQLVNPCISDDVVRSMIDVSGRFFDLPLEERAKYMTTDMRAPVRCGTSFSQTKDTVLCWRDFLKILCHPLPDFLPHWPTSPVDFRKVVATYAEETKHLFLVVMEAILESLGIMETKQELEEFGNGSQMMVANFYPPCPQPDLTLGMPPHSDYGFLTLLLQDEVEGLQILYQDKWVTVQPIPNAFVINVGDHLEIYSNGKYKSVLHRVLVNEFKSRVSVASLHSLPFNCTVKPSPKLVDEANPKRYMDTDFGSFLAYVSSRESNKKDFLESRKLKY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02443 369 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 367 - -
Cca03g02443 369 Pfam 2OG-Fe(II) oxygenase superfamily 221 316 IPR044861 -
Cca03g02443 369 SUPERFAMILY Clavaminate synthase-like 24 354 - -
Cca03g02443 369 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 14 367 - -
Cca03g02443 369 Gene3D - 15 350 IPR027443 -
Cca03g02443 369 Pfam non-haem dioxygenase in morphine synthesis N-terminal 65 163 IPR026992 -
Cca03g02443 369 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 218 318 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02443 Cca-Chr3 45507003 45509637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02443 9 342 Glycosyltransferase AT5G59530 35.652 5.42e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02443 - - gmx:100778488 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02443 03 45507003 45509637 Cca03g02443 03 45507003 45509637 ECH
Cca03g02443 03 45507003 45509637 Cca02g00487 02 10365139 10368102 PCT