Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00487 ATGTCTCCTGCAATGGTAGGCAGTGATGAGAAGGGTGAGGGTGGAAGTCAATATCAGAAAGGAGTGAAGCAACTCGTTGAGAATGGCCTTCACACGGTGCCTAAAAAGTACATACTTCCACATTCTGATCGACCTGCTATGAATTCAGAAGCTTCAAATGTTGCCAAGAAAAACCTTCAGCTACCCATCATTGATTTTTCTGAATTGCTTGGTCCAAGAAGGCCCCAAGTCCTTCAATCCCTAGCCAATGCCTGTGAAGGCTACGGATTTTTTCAGCTGGTAAACCATGGCATCTCAGATGATGTTATCAGCAGCATGAGGGATGTGAGTGGCAGGTTCTTCGATCTTCCTTTTGAGGAAAGAGCCAAGTATATGACAAATGATATGAGTGCACCGGTTCGGTATGGAACTAGCTTCAGCCAAACCAAAGACACTGTGTTCTGTTGGAGGGACTTCTTGAAACTCCTCTGCCACCCCCTGCCTGATTTCCTCCCCCATTGGCCTGCTTCTCCCTTAGACTTTAGGAAAGTGGCAGCTACCTACGCAGAAGAAACCAAATGCTTATTTCTGACATTGATGGAAGCAATCCAAGAGAGTTTAGGAATCATAGAAGAGGAGACAGAAGGAAAGGACAATATTATGAAGGACTTGGAAGATGGGAGCCAGATGATGGTGATGAATTTctacccaccatgccctgaaccagacctaactttgggtatgcctcctcactctgattatggattcctcacactcctcctccaagaccaggtggagggtttgcagatccaattccaaggtcaatggttcactgttcagcccatcaataatgcctttgttatcaatgttggtgatcatctagagATATATAGCAATGGGAAGTACAAGAGTGTGTTACATAGGGTTGTGGTTAATGCAGTGAAGAATAGGACATCTGTGGCTTCGCTTCATAGCCTTCCTTTCAACTGCACCGTAAGACCGTCACCAAAACTCATTGACGAAGAGAATCCCAAACGTTACGCAGACACCAATTTTGATACTTTTCTTGCCTACGTTACGACCAGAGAGCCCAAGAGAAAGGAGTTCCTCGACTCTAGGAAATTGACTTCTACTTCTACATGA 1122 0.3743 MSPAMVGSDEKGEGGSQYQKGVKQLVENGLHTVPKKYILPHSDRPAMNSEASNVAKKNLQLPIIDFSELLGPRRPQVLQSLANACEGYGFFQLVNHGISDDVISSMRDVSGRFFDLPFEERAKYMTNDMSAPVRYGTSFSQTKDTVFCWRDFLKLLCHPLPDFLPHWPASPLDFRKVAATYAEETKCLFLTLMEAIQESLGIIEEETEGKDNIMKDLEDGSQMMVMNFYPPCPEPDLTLGMPPHSDYGFLTLLLQDQVEGLQIQFQGQWFTVQPINNAFVINVGDHLEIYSNGKYKSVLHRVVVNAVKNRTSVASLHSLPFNCTVRPSPKLIDEENPKRYADTNFDTFLAYVTTREPKRKEFLDSRKLTSTST 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00487 373 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 13 368 - -
Cca02g00487 373 PRINTS Isopenicillin N synthase signature 81 98 - -
Cca02g00487 373 PRINTS Isopenicillin N synthase signature 244 265 - -
Cca02g00487 373 PRINTS Isopenicillin N synthase signature 279 305 - -
Cca02g00487 373 SUPERFAMILY Clavaminate synthase-like 20 355 - -
Cca02g00487 373 Pfam 2OG-Fe(II) oxygenase superfamily 222 317 IPR044861 -
Cca02g00487 373 Gene3D - 15 351 IPR027443 -
Cca02g00487 373 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 13 368 - -
Cca02g00487 373 Pfam non-haem dioxygenase in morphine synthesis N-terminal 61 159 IPR026992 -
Cca02g00487 373 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 319 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00487 Cca-Chr2 10365139 10368102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00487 19 348 Glycosyltransferase AT5G59530 34.118 4.23e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00487 - - gmx:100818253 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00487 02 10365139 10368102 Cca02g00487 02 10365139 10368102 ECH
Cca03g02443 03 45507003 45509637 Cca02g00487 02 10365139 10368102 PCT