Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02424 ATGGATTTCCACACAAACAATCCTCACTTCGTTTTGTTCCCCCTAATGGCTCAAGGGCACATCATTCCCATGATAGACATTGCAAAAGTATTGGCACAGCATGGGGTGATTGTTACCATTTTCACTACTCCAAAAAATGCATCACGTTTCAATTCAGTTATTGCTCGTGCTGTTTCATCAGGCCTCCAAATCCGGCAAGTACAACTCTATTTTCCATCAAAAGAAGTAGGACTACCCGAAGGGTGTGAGTGCTTCGACATGCTACCTTCAAACAATATGACGTACAAATTCTACCAAGCAGTCAACATGCTTCATGAGCCAGCGGGAGAAATGTTTGAAGCACTAACACCCAAACCAAGTTGCATTATTTCTGACTTTTGCATTCCTTGGACTACTCAAGTAGCTGAGAAGTATCGTATCCCTAGAATTTCATTCCACGGATTTTCTTGCTTCTACCTCCATTGTCTACACCAGATACACACTTCAAAGGTTTGTGAAAGCATCACTTCAGAATCAGAGTACTTTACTATTCCTGGTATACTTGACCAAATTCAAGTTACCAAAGAGCAGGCAATAATGAACTCAAATTCGGATGAAATGAATGATTTCTGGGAGCAGAGAAGTCTCGCTGAAATGAAGTCATATGGGGTGATCATAAATACTTTTGAAGAGTTGGAGAAGGCATATGTGAGGGATTACAAGAAGCTGAAAAATGATAAGGTATGGTGCATTGGTCCTGTTTCATTATGCAACAAGGATGGCTTAGATAAGGCTCAAAGAGGCAATGCGGATTCCATTAATAAAGAGCATCATTGCATGAAGTGGCTAGATTTGCATCAACCCAAGTCTGTGCTCTATGTTTGTTTTGGAAGCTTGTGCAATTTGATTCATTCACAGCTTGTGGAGCTGGCCTTGGCCTTGGAAGATGCTAAAAGACCATTTATATGGGTTATTAGGGAGGGAAGTAAGTTCCAGGAGTTGGAAAAGTGGATCTCCGAAGAAGGGTTTGAGGAAAGGACCAAAGGGAGAGGCCTTATAATTCGAGGTTGGGCTCCACAAGTACTAATATTATCACATTCTTCCATTGGAGGATTCTTAACACACTGTGGCTGGAATTCAACACTTGAAGGGGTGAGTGCTGGAGTGCCAATGGTTACTTGGCCTCTATTCTCTGATCAATTTTTAAATGAGAAGCTTGTTACTCAAGTGTTGAAGACTGGTGTAAGCGTTGGGGTAGAAGTTCCAATGAAGTGGGGAGAGGAAGAGAAAATGGATGTGTTAGTGAAGAAGGAAGATATTAAGAAGGCAATATGCTTGGTGATTGATGATCATGGTGAAGAAAGTAAAGAGAGAAGAGAAAGGGCACGCAAACTTAGTGAGATTGCAAAGATAGCTGTTGAAAAAGGAGGGTCTTCTCATCTTGATATGACTTTGCTTATCCATGACATTATGCAATCAAGTAATCGTGAGGAGGATAAGCATATAAAGTCCATGCCTAAAGAGTCGAAAATACCCGTACCCCAGGATATTTTTGGATAA 1539 0.4107 MDFHTNNPHFVLFPLMAQGHIIPMIDIAKVLAQHGVIVTIFTTPKNASRFNSVIARAVSSGLQIRQVQLYFPSKEVGLPEGCECFDMLPSNNMTYKFYQAVNMLHEPAGEMFEALTPKPSCIISDFCIPWTTQVAEKYRIPRISFHGFSCFYLHCLHQIHTSKVCESITSESEYFTIPGILDQIQVTKEQAIMNSNSDEMNDFWEQRSLAEMKSYGVIINTFEELEKAYVRDYKKLKNDKVWCIGPVSLCNKDGLDKAQRGNADSINKEHHCMKWLDLHQPKSVLYVCFGSLCNLIHSQLVELALALEDAKRPFIWVIREGSKFQELEKWISEEGFEERTKGRGLIIRGWAPQVLILSHSSIGGFLTHCGWNSTLEGVSAGVPMVTWPLFSDQFLNEKLVTQVLKTGVSVGVEVPMKWGEEEKMDVLVKKEDIKKAICLVIDDHGEESKERRERARKLSEIAKIAVEKGGSSHLDMTLLIHDIMQSSNREEDKHIKSMPKESKIPVPQDIFG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02424 512 PANTHER GLYCOSYLTRANSFERASE 4 492 - -
Cca03g02424 512 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 485 - -
Cca03g02424 512 CDD GT1_Gtf-like 8 465 IPR002213 GO:0008194
Cca03g02424 512 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 272 411 IPR002213 GO:0008194
Cca03g02424 512 Gene3D Glycogen Phosphorylase B; 274 467 - -
Cca03g02424 512 MobiDBLite consensus disorder prediction 489 512 - -
Cca03g02424 512 ProSitePatterns UDP-glycosyltransferases signature. 350 393 IPR035595 -
Cca03g02424 512 Gene3D Glycogen Phosphorylase B; 2 273 - -
Cca03g02424 512 PANTHER GLYCOSYLTRANSFERASE 4 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02424 Cca-Chr3 45341409 45342947 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02424 9 485 Glycosyltransferase AT2G36780 55.324 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02424 K13496 K22771 gmx:100802029 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02424 03 45341409 45342947 Cca03g02424 03 45341409 45342947 ECH
Cca03g02424 03 45341409 45342947 Cca02g00479 02 10221911 10223389 PCT