Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02408 ATGTTCAAGCGAATCATGAAGGGAGGCCAGAAGAAGCCCTCCAAGCCGGAGGACGCCTCCGCCTTCGGCCCCACGCCGCCCGCCGCCCCCGCCCCGCCCGTCACAGTGCCGCCGCCCTCGGGGACCATAGAGCCGCTGCCGCCGCTCCGCGACGCGGCGGTGTCGGAGCGGCAGAGCCTCTTCATCCGGAAGCTCCAGATATGCTGCCACGTGTTGGACTTCTCGGACACGCTGAAATCCGTGCGCGAGAAGGAAATCAAGCGGCAGACGCTGATGGAGCTGGTGGATTTCATCCAATCGGGCTCCGGCAAGATCACGGAGACTTGCCAGGAGGAGATGATCAAGATGGTGTCGGCGAACATTTTCCGGTGCCTCCCGCCGGCGTCGCACGAGAACACCGGCCAGGAAGCCACCGATCCGGAGGAGGAGGAGCCGTGCCTCGAGCCGGCTTGGCCGCACTTGCAGCTTGTCTACGAGCTTCTCCTCAGATACGTCGTTTCCTCCGACACTGACACAAAGGTTGCGAAACGGTATATCGATCATTCCTTTGTACTCAAATTACTTGATTTGTTCGACTCTGAGGACCCTCGTGAACGTGAATATCTGAAAACCATATTGCACCGTGTGTACGGGAAATTCATGGTTCATCGCCCCTTCATTAGGAAGGCCATTAACAACATATTTTTTCGGTTTATATATGAGACTGAGAGGCATAGTGGTATTGGGGAGCTTCTGGAGATTCTGGGGAGCATTATTAATGGGTTTGCTCTGCCGATGAAGGAGGAGCATAAGTTGTTTCTTGCCAGGGCGCTTCTGCCTCTGCATAAGCCCAAGCCCGTGGCTGTGTACCACCAGCAGTTGTCGTATTGCATTGCGCAGTTTGTGGAGAAGGATTTCAAGCTGGCGGATACGGTGATTAGGGGGTTGATAAAGTATTGGCCTTTGACTAATTGCCAGAAGGAGGTTCTCTTCCTTGGGGAACTCGAGGAGGTGCTGGAGGCCACGCAGGCGGCGGAATTCCAACGCTGCATGGTCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTGCAGAACGAGCTTTATTTTTATGGAATAATGAGCACATTGTCAGCTTAATTGCACAAAACAGGACTGTAGTATTACCCATAATATTTGAAGCATTGGAGAAAAATATCCAGTCTCATTGGAATCGGGCTGTTCACGGACTGACTGTGAACGTTCGGAAAATGTTCCAAGAAATGGATGCAGAATTGTTTGAAGAGTGTCAGAGACAATATGCAGAGAGGGAGGCTAAAGCAAAAGAATTAGAAGAGCAGCGGGAATTGAATTGGAAGAGGTTGGCAGATGCGGCTGCGCAGAATGGGGCAGATATGGTCACAGCTTAG 1404 0.5278 MFKRIMKGGQKKPSKPEDASAFGPTPPAAPAPPVTVPPPSGTIEPLPPLRDAAVSERQSLFIRKLQICCHVLDFSDTLKSVREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVSANIFRCLPPASHENTGQEATDPEEEEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLARALLPLHKPKPVAVYHQQLSYCIAQFVEKDFKLADTVIRGLIKYWPLTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQVARCLNSSHFQVAERALFLWNNEHIVSLIAQNRTVVLPIIFEALEKNIQSHWNRAVHGLTVNVRKMFQEMDAELFEECQRQYAEREAKAKELEEQRELNWKRLADAAAQNGADMVTA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02408 467 Coils Coil 425 445 - -
Cca03g02408 467 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 464 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca03g02408 467 MobiDBLite consensus disorder prediction 1 48 - -
Cca03g02408 467 PIRSF PP2A_B56 13 466 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca03g02408 467 SUPERFAMILY ARM repeat 58 439 IPR016024 -
Cca03g02408 467 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 464 - -
Cca03g02408 467 MobiDBLite consensus disorder prediction 23 45 - -
Cca03g02408 467 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 46 457 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca03g02408 467 Gene3D - 54 456 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02408 Cca-Chr3 45169792 45176100 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02408 K11584 - gmx:100798308 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02408 03 45169792 45176100 Cca03g02408 03 45169792 45176100 ECH
Cca03g02408 03 45169792 45176100 Cca02g00454 02 9644636 9652685 PCT