Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00454 ATGTTCAAGAAAATCATGAAAGGAGGGAAGAAGCCCTCCAAGTCCGACGCCAGCGATCCCCCTCCGCCGCCGTACGCCGCCGCCAACCGCGTGCCGCCGCCCTCCGCCAATGTCGTCGTCAACCACGCCTCGCGCGGCGCCGCTGGCTCCGCGGCGAATTCCGCCTCCGCTCTCCCCCTCGTGCCGCTGTCCGGCGCGATGGAGCCGGTGCCGCCGTTCCGCGACGCGGCGGCGTCCGAGCGGCAGAGCCTGTTCCTCCGGAAGCTCCACGTGTGCTGCTACGCGCTGGACTTCTCGGACACGCTGAAGAACGTGAGAGAGAAGGAAATCAAGCGGCAGGCTCTGATGGACCTCGTGGACTTCATCCAATCGGGCTCCGGCAAGATGTCGGAGAATTGCCAGGAGGAGATGATCAGAATGATCTCCGTCAACATTTTCCGGTGCCTCCCGCCGGCGTCGCATGAAAACACCGGCCAGGAACCCGCCGATCCCGAGGAGGAGGAACCGAGCATGGACCCCTCCTGGCCTCACCTTCAGCTCGTGTACGAGCTTCTCCTCAGATACATTGTTTCCTCCGATACCGATGCTAAAATCGCCAAACGGTATATCGATCACTCCTTCGTTCTCAAATTGCTTGATTTGTTTGACACTGAGGACCCGCGGGAGAGGGAATATTTGAAAACCATACTGCATCGTATATACGGGAAATTCATGGTTCATAGGCCGTTTATTAGGAAAGCTATTAACAACATTTTTTACCGGTTTATATATGAGACTGAGCGGCACTGTGGTATTGGGGAGCTTCTGGAGATTCTTGGGAGCATTATTAATGGGTTTGCTCTGCCCATGAAGGAGGAGCATAAGTTGTTTCTGGTGAGGGCGCTTTTGCCTCTGCATAAGCCCAAGTCCGTGGGGATGTACCACCAGCAGTTGTCTTACTGCATCACGCAGTTCGTGGAGAAGGATTTCAAGCTGGCGGATACCGTGATTAGGGGGTTGTTGAAGTATTGGCCTGTTACTAATTGCCAGAAGGAGGTTCTCTTCCTTGGAGAGTTGGAGGAAGTGCTGGAGGCCACGCAGGCGGCAGAGTTTCAACGATGCATGGTTCCCCTTTTTAGACAGATTTCGCGCTGCCTCAATAGCCCTCACTTTCAGGTTGCAGAACGAGCCCTCTTTTTGTGGAATAATGAGCATATTGTGAGCTTAATTGCCCAAAACAGGACTGTGATATTACCAATAATATTTGAAGCATTTGAAAGAAATATTTCGAGTCACTGGAATCAGGCAGTTCACGGTCTGACTGTGAATGTTCGCAAAATGTTCTTGGAAATGGATGCAGAATTGTTTGAAGAGTGCCAGAGGCAGCATTCAGAGAAAGAGGCTAAAGCCAAAGAAATAGAAGAGGAGCGGGAACTTAAATGGAAGAGACTGGCAGATGCTGCTTCACGGAATGGAGTTGAGGATATGGTCACAACTTAG 1479 0.526 MFKKIMKGGKKPSKSDASDPPPPPYAAANRVPPPSANVVVNHASRGAAGSAANSASALPLVPLSGAMEPVPPFRDAAASERQSLFLRKLHVCCYALDFSDTLKNVREKEIKRQALMDLVDFIQSGSGKMSENCQEEMIRMISVNIFRCLPPASHENTGQEPADPEEEEPSMDPSWPHLQLVYELLLRYIVSSDTDAKIAKRYIDHSFVLKLLDLFDTEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHCGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKSVGMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQISRCLNSPHFQVAERALFLWNNEHIVSLIAQNRTVILPIIFEAFERNISSHWNQAVHGLTVNVRKMFLEMDAELFEECQRQHSEKEAKAKEIEEERELKWKRLADAASRNGVEDMVTT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00454 492 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 71 481 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca02g00454 492 Coils Coil 449 469 - -
Cca02g00454 492 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 485 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca02g00454 492 PIRSF PP2A_B56 8 491 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca02g00454 492 MobiDBLite consensus disorder prediction 1 38 - -
Cca02g00454 492 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 485 - -
Cca02g00454 492 MobiDBLite consensus disorder prediction 16 30 - -
Cca02g00454 492 Gene3D - 77 480 IPR011989 -
Cca02g00454 492 SUPERFAMILY ARM repeat 82 463 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00454 Cca-Chr2 9644636 9652685 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00454 K11584 - gmx:100795277 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00454 02 9644636 9652685 Cca02g00454 02 9644636 9652685 ECH
Cca03g02408 03 45169792 45176100 Cca02g00454 02 9644636 9652685 PCT