Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02404 ATGGATGAAGAATCTAAGAGAATGGAAGAAGGCATCAAATCACCATTGAATGGTGACTTGAAGAAGGAGGAAAGCATTAAAACCAGCAACGGAGGTTCTATTATTGATCATGACAAAGACAAAATGGCTAACCCTGTGGCTGTTGGTGAGTCTGTCAAGGAGCAACCACCACTGGTTAAGCACAAGACCAAGAGGGTTGCAACTCTCGATGCATTTAGGGGTCTCACCATAGTGTTGATGATACTGGTAGACGATGCTGGTGAAGCTTATCCACGCATTGATCATTCCCCGTGGAATGGATGTACTTTGGCCGATTTCGTTATGCCTTTCTTTCTTTTCATTGTTGGGGTTGCCATAGCCCTTGCACTAAAGAGAATCCCCGAGATAAAGCCTGCCGTAAAGAAGATAATCCTTAGGACATTGAAGCTTCTCTTCTGGGGTATAATTTTACAAGGGGGTTATTCTCATGCACCTGATGATCTCGAGTATGGAGTTAACATGAAATTTATCCGGTGGTGTGGCATTCTCCAGAGAATAGCTCTTGTATACTGTGTTGTAGCTCTAATAGAGACATTTACCACCAAGCTTAGACCCACTACATTGGGTTCTGGACACCTATCTATTTTTACTGCCTACAGATGGCAGTGGTTTGGGGGCTTCGTGGCTTTTTTCATTTATATGATCACAACCTACACCCTCTACGTTCCCGATTGGAGTTTCGTCGATCATTTTGACGAAGACGAACCAGCAAAGAGATACACGGTCATATGTGGAATGAGAGGACACCTAGGGCCAGCATGTAATGCTGTTGGGTACGTGGACCGACAAGTTTGGGGGGTCAACCATCTTTACTCTCAACCTGTTTGGAGACGCTTGAAGGCGTGTACATTCAGTTCTCCACACGAAGGTCCTTTTCGTGAAGATGCTCCAAGTTGGTGTCGGTCTCCTTTTGAACCCGAAGGCTTGTTGAGTTCTATATCAGCTATTCTCTCTGGCACTATTGGCATCCATTATGGGCACGTGTTGATTCATTTCAAGGGTCATTCGGAGAGGCTAAAACAATGGGTCTCAATGGGTTTTGTGTTACTCATAATAGCCATCATCCTTCACTTTACAGATGCTATCCCACTTAACAAGCAACTCTACAGCTTCAGCTATGTTTGTTTCACTGCTGGTGCTGCTGGAATTGTCTTCTCAGGGCTTTACATACTGATCGATATTTGGGGGCTCCGCACTCCATTCTTGTTCTTGGAGTGGATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCCCAGGGCATCTTCGCAGCATTTGTAAATGGATGGTATTATGAAGATCCACGTAACTCACTTGTACACTGGATCAAGAAGCATGTGTTTGTGAATGTTTGGCACTCGGAGAGGGTGGGAACCATCTTGTATGTGATCTTTGCAGAAATCACTTTCTGGGGAGTGGTTGCTGGCGTTTTGCACAAATTAGGAATATATTGGAAACTGTAA 1503 0.4444 MDEESKRMEEGIKSPLNGDLKKEESIKTSNGGSIIDHDKDKMANPVAVGESVKEQPPLVKHKTKRVATLDAFRGLTIVLMILVDDAGEAYPRIDHSPWNGCTLADFVMPFFLFIVGVAIALALKRIPEIKPAVKKIILRTLKLLFWGIILQGGYSHAPDDLEYGVNMKFIRWCGILQRIALVYCVVALIETFTTKLRPTTLGSGHLSIFTAYRWQWFGGFVAFFIYMITTYTLYVPDWSFVDHFDEDEPAKRYTVICGMRGHLGPACNAVGYVDRQVWGVNHLYSQPVWRRLKACTFSSPHEGPFREDAPSWCRSPFEPEGLLSSISAILSGTIGIHYGHVLIHFKGHSERLKQWVSMGFVLLIIAIILHFTDAIPLNKQLYSFSYVCFTAGAAGIVFSGLYILIDIWGLRTPFLFLEWIGMNAMLVFVMAAQGIFAAFVNGWYYEDPRNSLVHWIKKHVFVNVWHSERVGTILYVIFAEITFWGVVAGVLHKLGIYWKL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02404 500 MobiDBLite consensus disorder prediction 1 35 - -
Cca03g02404 500 PANTHER HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE-LIKE PROTEIN 1 500 - -
Cca03g02404 500 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g02404 500 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 65 196 IPR012429 -
Cca03g02404 500 PANTHER LD22376P 1 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02404 Cca-Chr3 45135698 45140274 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02404 K10532 - gmx:100819967 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02404 03 45135698 45140274 Cca03g02404 03 45135698 45140274 ECH
Cca03g02404 03 45135698 45140274 Cca02g01260 02 30638014 30646031 PCT