Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01260 ATGTCAAGTGAGGTAGATGGCATTGCAGAAGAACAAGGAAGAGCTCTTCTCGGCCATAATTATGATTCCTCAATTCCCATCGTCCATCAAAATGAAGACACTATCTTTCCTTTGCCATTCCATCATACAAATACATCATCTTTACCCTCTCTTTCTGTTCCTAATCAACGTCTTGCTTCTCTCGATGTCTTCCGCGGTCTAACGATTGCGTTGATGATATTAGTTGACAATGTGGGAAGAGCTTTCCCATCCTTGAATCATTCTCCATGGTTTGGGATGACACTAGCCGATTTTGTAATGCCGTTTTTTCTATTTGTGGTTGGCGTTTCTATTGGTCTGGTATTCAAGAAAGTCTCTAGAAAATCCAATGCCACGAAAAAAGTTGTATTTAGGACAATTAAGCTTTTCCTTTTGGGGTTGATACTTCAAGGTGGGTATTTCCATGGGCGTGGTAAATTAACATATGGAGTTGATTTGAGCAAGATACGCTGGCTTGGTGTACTCCAGAGGATATCTATTGGATATTTCTTGGCCTCAATATCAGAGATTTGGCTTGTGAACCATAATATTTCGGTTGACTCACCAGCAGCTTTTGTGAAGAAATACTTCATTCAGTGGATGTTTTCTATCCTTCTTTGCTCAGTGTACCTTTGCTTGCTCTACGGTCTCTATGTTCCGAATTGGAAATTCGAACATTCTAATTTGCTTTGGTCCAGTCGTCTATCAATTATTGAAAACGTTCATTGCGAAGTGAGGGGAAGTCTTGAACCTCCTTGTAATGCTGTGGGGTTTATTGATAGATTAATTCTTGGTAAAGATCATATATACCAGCGTCCTGTGTATAGAAGAACAGAGGAGTGTAGTGTCAATTCTCCTGATTATGGACCCTTACCTCCTGGTTCACCTGGATGGTGCCTTGCACCATTTGATCCAGAGGGTATTCTAAGTTCATTGATGGCTGCAATTACTTGTTTTATGGGATTGCAATATGGGCACATAATTGTACTTTTGCAGGGTCACAAACAGAGGGTACTTCTTTGGTCTGTGTTTTCCTTCTGTCTATTGCTAGTAGGATACATTCTGGAGATTTTAGGAGCATCAGGCTTAGTCTTGACTGCTATCTATTACATTGTTGACATAGAGCAGCTCAGAAAGCCTACAATTTTACTGCAATGGATGGGAATGAATGCTCTTGTTGTATATGCATTGGCAGCTTGTGACATTTTCCCAGCAGTTATCCAGGGTTTCTATTGGCATTCTCCTGAAAATAATTTGGTTGACGCCAGTGAAGCTTTGATGCAAACCATATTGCATTCCGAAAAGTGGGGCACAATGGCCTTTGTAATAGTTGAAATTTTATTCTGGGGTCTTTTTGCCGGTTTCCTCCACAAGAAAGGGATATATATAAAATTGTAA 1416 0.4018 MSSEVDGIAEEQGRALLGHNYDSSIPIVHQNEDTIFPLPFHHTNTSSLPSLSVPNQRLASLDVFRGLTIALMILVDNVGRAFPSLNHSPWFGMTLADFVMPFFLFVVGVSIGLVFKKVSRKSNATKKVVFRTIKLFLLGLILQGGYFHGRGKLTYGVDLSKIRWLGVLQRISIGYFLASISEIWLVNHNISVDSPAAFVKKYFIQWMFSILLCSVYLCLLYGLYVPNWKFEHSNLLWSSRLSIIENVHCEVRGSLEPPCNAVGFIDRLILGKDHIYQRPVYRRTEECSVNSPDYGPLPPGSPGWCLAPFDPEGILSSLMAAITCFMGLQYGHIIVLLQGHKQRVLLWSVFSFCLLLVGYILEILGASGLVLTAIYYIVDIEQLRKPTILLQWMGMNALVVYALAACDIFPAVIQGFYWHSPENNLVDASEALMQTILHSEKWGTMAFVIVEILFWGLFAGFLHKKGIYIKL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01260 471 PANTHER LD22376P 13 471 - -
Cca02g01260 471 PANTHER OS05G0155700 PROTEIN 13 471 - -
Cca02g01260 471 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 57 181 IPR012429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01260 Cca-Chr2 30638014 30646031 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01260 K10532 - gmx:100802361 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02404 03 45135698 45140274 Cca02g01260 02 30638014 30646031 PCT