Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02403 ATGGGAATACTACAGGACGATGTGGTGCTTATCAGAGAGGCAGAGAAAGAAGGTGAAACCACCGTCATAACCGTTAACTGCCCCGACAAGACCGGTCTAGGTTGCGATTTGTGTCGCATCATTCTCTTCTTTCGTCTTAGCATTGTCCGAGGAGACGTCTCCACCGACGGAAAATGGTGCTACATAGTTTTCTGGGTGGTGGGGAAGCAGAGGACCAGGTGGAGTTTGTTGAAGAAGAGGCTCATTCAGGCATGCCCTTCTTGTTCCTCAGCTTCTGGAATTTCCTATTACCGTTCTGAGGTGCAGCCTCCTCAGCCCCCCAATGTCTTCCTTTTAAAATTCTCTTGCCATGATCGTCAAGGACTTTTACATGATGTTACCGAGGTTCTTTGTGAGTTAGAGCTCACCATAAAGAAAGTGAAGGTATCTACTACGCCGGATGGCAGAGTAGTGGATCTGTTTTTCATCACCGATACCAGGGAACTTCTACATACAAAGAAGAGAAAGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGAGATCCCTATGTTACCATTGACATTGAATTGGTTGGCCCGGAAATCACTGCTTGTTCTCAAGCATCTCCATTCCTTCCAAGTGCAATCACAGAAGATATCTTTGATTTGGAATCACCTGATTCAATACCAAGAGGGACTTCCACAACTGATTCTGTTTCTATTGTGATGGACAATTCGCTTAGTCCTGCTCACACGCTTGTTCAAATTGTATGTCAAGACCACAAAGGTCTTCTTTATGACATCATGAGAACACTGAAGGACTACAATATTCAGATTTCTTACGGGCGATTCTCTACAAAACCTAAAGGAAAATGTGAGATCGACTTGTTCATCGTGCAATCGGATGGGAAAAAGATAGTGGACCCAAGCAAGCAAAAGTCTTTGTCGTCGCGCCTTAGGATGGAACTCCTTCGTCCTCTCAGAGTAACTATTGTAAGCAGGGGTCCTGATACAGAGCTGCATGTTGCAAACCCTGTGGAGTTGTCTGGCAAAGGACGACCTCTTGTCTTTTATGATATCACTCTTGCTCTCAAAATGCTTGGCCCTTGCATCTTTTCGGTACTTACTCATCTGATCGCTCTTTGTAACTTCATAAGGTTTATTTTCCACTTTCCATGTGTGCTCGAATTTCGCAATTAA 1182 0.4425 MGILQDDVVLIREAEKEGETTVITVNCPDKTGLGCDLCRIILFFRLSIVRGDVSTDGKWCYIVFWVVGKQRTRWSLLKKRLIQACPSCSSASGISYYRSEVQPPQPPNVFLLKFSCHDRQGLLHDVTEVLCELELTIKKVKVSTTPDGRVVDLFFITDTRELLHTKKRKDDTIEQLSAILGDPYVTIDIELVGPEITACSQASPFLPSAITEDIFDLESPDSIPRGTSTTDSVSIVMDNSLSPAHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFSTKPKGKCEIDLFIVQSDGKKIVDPSKQKSLSSRLRMELLRPLRVTIVSRGPDTELHVANPVELSGKGRPLVFYDITLALKMLGPCIFSVLTHLIALCNFIRFIFHFPCVLEFRN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02403 393 Gene3D - 102 190 - -
Cca03g02403 393 ProSiteProfiles ACT domain profile. 247 328 IPR002912 -
Cca03g02403 393 SUPERFAMILY ACT-like 244 298 IPR045865 -
Cca03g02403 393 SUPERFAMILY ACT-like 18 81 IPR045865 -
Cca03g02403 393 ProSiteProfiles ACT domain profile. 111 194 IPR002912 -
Cca03g02403 393 PANTHER FOUR ACT DOMAIN ACT DOMAIN PROTEIN WHICH PROTEIN 2 368 - -
Cca03g02403 393 SUPERFAMILY ACT-like 107 186 IPR045865 -
Cca03g02403 393 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 368 IPR040217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02403 Cca-Chr3 45129403 45132514 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02403 - - gmx:100797226 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02403 03 45129403 45132514 Cca03g02403 03 45129403 45132514 ECH
Cca03g02403 03 45129403 45132514 Cca02g00451 02 9562117 9565862 PCT