Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02393 ATGGGAGAGAAAAATGAGGCCGATTCAGGAGCAAAGCAAAACGACGCACCCGCCCCTGTCGTTTTCAAACTCGACATGCATTGCGAGGGATGCGTCAAAAAGATCAAGCGCGCCGTTCGCCATATCCACGTTTTCTATTCGGTGTCGGATGCAGGTGTGGAAGACGTGAAAGCCGATTTGTCCGGTAACAAACTAACGGTTATCGGAAAAATAGACCCTGCCGAGGTGCGAGATAAACTAGCGGATAAAACTAAGAAGAAGGTTGAACTCGTTTCGCCTCAGCCGAAAAAAGACGACGACGCCGGTGCACCGCCGGCGAAGAAGCCGGAGGAGAAAAAACCGGAAGATAAGAAGTCCGAAGAAAAATCTCCGAAAGAGAGCACGGTGGTGTTGAAGATCAGATTGCACTGTGACGGTTGCATTCAAAAAATTCGAAAGATTATCTTGAGGAACAAAGGAGTTGAATCAGTGAACGTTGAGGGAGAGAAGGATTTGGTGACCGTAAAGGGGACGATGGACGTGAAGGAAATGGTACCGTATTTGAACGATAAGCTGAAGCGAAACGTTGAGGTGGTCCCAGCCAagaaagagaaagagaaagagaaagaggagaagaagaatgagaagaaggaaggtggtggtgataagaaaaaggaagagagtgaaggtgcagcgaaggtggaggTTAACAAAATGGAGCACTACGGATACGCGTACCCTCCACCCCCTATGTATTGGTACGATGGATACGCACCTGGTGAAAGCAGCAGTAGCAGAAGCTACGCCGTAGAGGTTCAGCCAGGGTATGATGGTAGTAATAATCATAATTATTACGGGAATTACCAGCATGGGTACACGAACCAAGGGTACATGGCACCACCACCCCCGTTTTACTTGAACCCTCACCATCCTCCCCCACAAATGTTCAGCGATGAGAATCCCAATGCGTGTTCGCTCATGTGA 963 0.4372 MGEKNEADSGAKQNDAPAPVVFKLDMHCEGCVKKIKRAVRHIHVFYSVSDAGVEDVKADLSGNKLTVIGKIDPAEVRDKLADKTKKKVELVSPQPKKDDDAGAPPAKKPEEKKPEDKKSEEKSPKESTVVLKIRLHCDGCIQKIRKIILRNKGVESVNVEGEKDLVTVKGTMDVKEMVPYLNDKLKRNVEVVPAKKEKEKEKEEKKNEKKEGGGDKKKEESEGAAKVEVNKMEHYGYAYPPPPMYWYDGYAPGESSSSRSYAVEVQPGYDGSNNHNYYGNYQHGYTNQGYMAPPPPFYLNPHHPPPQMFSDENPNACSLM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02393 320 CDD HMA 26 89 IPR006121 GO:0046872
Cca03g02393 320 SUPERFAMILY HMA, heavy metal-associated domain 21 83 IPR036163 GO:0046872
Cca03g02393 320 Gene3D - 15 99 - -
Cca03g02393 320 Coils Coil 191 211 - -
Cca03g02393 320 MobiDBLite consensus disorder prediction 195 224 - -
Cca03g02393 320 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 3 320 IPR044594 GO:0046872
Cca03g02393 320 ProSiteProfiles Heavy-metal-associated domain profile. 26 82 IPR006121 GO:0046872
Cca03g02393 320 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 3 320 - -
Cca03g02393 320 SUPERFAMILY HMA, heavy metal-associated domain 128 183 IPR036163 GO:0046872
Cca03g02393 320 CDD HMA 135 170 IPR006121 GO:0046872
Cca03g02393 320 Gene3D - 125 200 - -
Cca03g02393 320 Pfam Heavy-metal-associated domain 132 189 IPR006121 GO:0046872
Cca03g02393 320 Pfam Heavy-metal-associated domain 22 83 IPR006121 GO:0046872
Cca03g02393 320 MobiDBLite consensus disorder prediction 83 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02393 Cca-Chr3 44998625 45000247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02393 - - gmx:100795652 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02393 03 44998625 45000247 Cca03g02393 03 44998625 45000247 ECH
Cca03g02393 03 44998625 45000247 Cca02g00817 02 22628191 22630105 PCT