Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00817 ATGGGAGAGCAAAAGGACCAACCAAAGAAAGAAACCGAGAAGAAGCCCGAGGAGGGAGCCGCCAAGAAAGACGACGCTCCGGCCCCCGTCGTTTACAAGCTCGACTTGCATTGCGAGGGATGCGTCAAGAAGATCAAACGCACCGCTCGCCACTTCCCAGGTGTGGAAAACGTTAAAGCAGATCTATCGGCTAACAAAGTCACGGTTACCGGTAAAATCGACGCCGAGAAGCTGCGAGAGAAGCTCGCCGAGAGAACTAAGAAGAAGGTTGAGCTCGTCTCTCCTCCGCCGAAGAAAGACGCCGAGAAACCGCCGGAGAAGAAGCCGGAAGAGAAGAAACCAGAAGAAAATAAGCCTAAAGAGAGCACGGTCGTTTTGAAGATCAAACTGCACTGTGACGGTTGCATTGCGAAGATTCGACGAATCATTCTGAGGTTCAAAGGTGTTGAAACGGTGAGCCTCGACGGAAGCAAGGACCTGGTGACGGTGAAGGGAACGATGGACGTGAAGGAGATGGTGCCGTACCTGAACGAGAAGCTGAAGCGAAGCGTCGAGGTGGTTCCGGCGAAGAAGGACGACGATAagaaagagaaggaaggcggtggcggcgagaagaaagagaaggcggaaggcggagagaagaaagagaaggcggaaggcggtggcgaaaagaaagaggacggtggtggtgcggcggcggaggcggCGAAGGTGGAGGTTAACAAAATGGAGCATATGTACCCGATGGCGCCTCCTTCGTTCTGGTACGATGGACAGTTTCCCGGTCAAACGAGTTACGCTATGCCTATGGAGGTTCACCCAGGGTACGCTAATGGTAATAATCATTACGTGGAGCCAGGGTACGTGAACCAGGGTTATCCTATGCAGCCACCCTTACCGTACTACATGAACCCTCACGCCCCTCCTCCGCAGATGTTCAGCGATGAGAACCCCCACGGTTGCTCCATCATGTGA 975 0.4636 MGEQKDQPKKETEKKPEEGAAKKDDAPAPVVYKLDLHCEGCVKKIKRTARHFPGVENVKADLSANKVTVTGKIDAEKLREKLAERTKKKVELVSPPPKKDAEKPPEKKPEEKKPEENKPKESTVVLKIKLHCDGCIAKIRRIILRFKGVETVSLDGSKDLVTVKGTMDVKEMVPYLNEKLKRSVEVVPAKKDDDKKEKEGGGGEKKEKAEGGEKKEKAEGGGEKKEDGGGAAAEAAKVEVNKMEHMYPMAPPSFWYDGQFPGQTSYAMPMEVHPGYANGNNHYVEPGYVNQGYPMQPPLPYYMNPHAPPPQMFSDENPHGCSIM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00817 324 CDD HMA 125 165 IPR006121 GO:0046872
Cca02g00817 324 ProSiteProfiles Heavy-metal-associated domain profile. 36 84 IPR006121 GO:0046872
Cca02g00817 324 SUPERFAMILY HMA, heavy metal-associated domain 31 88 IPR036163 GO:0046872
Cca02g00817 324 Pfam Heavy-metal-associated domain 127 185 IPR006121 GO:0046872
Cca02g00817 324 Pfam Heavy-metal-associated domain 35 84 IPR006121 GO:0046872
Cca02g00817 324 Gene3D - 120 193 - -
Cca02g00817 324 Gene3D - 27 100 - -
Cca02g00817 324 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 1 324 - -
Cca02g00817 324 MobiDBLite consensus disorder prediction 187 232 - -
Cca02g00817 324 CDD HMA 36 91 IPR006121 GO:0046872
Cca02g00817 324 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 1 324 IPR044594 GO:0046872
Cca02g00817 324 SUPERFAMILY HMA, heavy metal-associated domain 123 177 IPR036163 GO:0046872
Cca02g00817 324 MobiDBLite consensus disorder prediction 86 121 - -
Cca02g00817 324 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00817 Cca-Chr2 22628191 22630105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00817 - - ccaj:109790448 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00817 02 22628191 22630105 Cca02g00817 02 22628191 22630105 ECH
Cca03g02393 03 44998625 45000247 Cca02g00817 02 22628191 22630105 PCT