Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02386 ATGTTTTGTTCCTCTTCTCCGCCTTCAGTTATGATGCTTCATGAACAAGCTGCTCCAGCAGTTGCTGCCTCCTGGTCTTCTAGTTCTGCAGCTCAGCATTTTCCTGCCTCTGTTCTTTTACAAGAGCAGCGTGATGAGTATAAGCCCCTACTTCACGTCTATAATAAGGAGGCAACATTAAATACTAGGCAGATGGATATGACCTCAGTTCATGAGAAAAGCAACACTGACAATGCTGATCAGTTAGTACATGACTTCGTTCAGCAGTTACATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTCTCCGACAAGGGGAATTGCTCCTTCTTCGATTCTGCAACCTGTTGATATTGATTCAGAGAGGCCTGTAGATGTTCTGCCAGGGGATGCGGTTTCTCTTGCTCAGCAAGCTTTGTCAGCATCAAAGCAAGCAGCTTCAATAACTGAAGAGATGACATCAGTTGAAGCTGATAATGATGACTCACTTCCATTTGGTCGGGCCTCCACAAGTTTGGCTGACACTTCACTCAAAGAGAATAAAATTGTAAGGTCAACACGGATTATAGAAAGACGGTCTAAACAGAGAAAAGTATCAAAGTCAAAAGATTTTGACGAAGAGAGTTACCTTGCAAGAAAGTCTGATGTACAAAGAAGGTTACATTTAGAAAAGAAGTTAAAAGAAGCGTTTGATCAAAATGACCCCCTGCGCTTGTTCCTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTACAGGATTTATCAAGATTGGAAGAAGTAAAAGTCAAGCTTCAATCTCAGTTAAGGCGGGAACCAACATTGGCGGAATGGGCTGATGTCGTGGGCCTCAGTTGTTGTGCCCTGCAGACACAGCTTCATTCTGGTAAAAGAAGCAAAGAAAAGCTGTTTCATGCCAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAACCTTCAGGACTTATTACAGGAGGGAAGTACAGGTCTTATGATGAGCATCGATAGGTTTAAACCTGAAGCTGGTTGCCGTTTTGGTACTTATGCATACTGGTGGATAAGGCATTCCATAAGGAAGTCTATATTTCAACATTCCAGGACAATCCGTTTGCCGGAGAATTTATATAGCCTTTTGGGGAAGGTAATAGAAGCGAAGAAATCATACATTCAGGAAGGAAATCTTCGACCCAGCAAAGAAGAATTAGCACAAAGGGTAGGAATTACAGTAGAAAAGTTGGAAAATTTGCTATTTGCTTCAAGAACTCCAATTTCGATGCAGCAAACTGTGTGGGCAGACCAAGATACAACGTTCCAGGAGATTACTGCAGACTCAACAATGGAGATCCCAGATGTGATTGTTTCAAAACAACTAATGAGGAGGCATGTGCACAGCCTCCTAAATATCTTAAGCCCAAAAGAGAAGACCATAATCAGGCTAAGATTTGGTATTGAGGATGGCAAGGAGAAAACGTTGTCAGATATTGGCAAGGTTTTTGGTTTGACCAAGGAGAGGGTCCGACAGTTGGAGAGACGAGCATTATCCAAGCTCAAGCAGTGTCTTGTAAGTCAAGGACTTGAAGCATATATAGACTTGCTTGCATAG 1650 0.4242 MFCSSSPPSVMMLHEQAAPAVAASWSSSSAAQHFPASVLLQEQRDEYKPLLHVYNKEATLNTRQMDMTSVHEKSNTDNADQLVHDFVQQLHLRSHLQNLLTCSPTRGIAPSSILQPVDIDSERPVDVLPGDAVSLAQQALSASKQAASITEEMTSVEADNDDSLPFGRASTSLADTSLKENKIVRSTRIIERRSKQRKVSKSKDFDEESYLARKSDVQRRLHLEKKLKEAFDQNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKVKLQSQLRREPTLAEWADVVGLSCCALQTQLHSGKRSKEKLFHANLRMVVHIAKHYQGRGLNLQDLLQEGSTGLMMSIDRFKPEAGCRFGTYAYWWIRHSIRKSIFQHSRTIRLPENLYSLLGKVIEAKKSYIQEGNLRPSKEELAQRVGITVEKLENLLFASRTPISMQQTVWADQDTTFQEITADSTMEIPDVIVSKQLMRRHVHSLLNILSPKEKTIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLERRALSKLKQCLVSQGLEAYIDLLA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02386 549 Pfam Sigma-70 region 2 313 382 IPR007627 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 386 459 IPR013324 -
Cca03g02386 549 Gene3D - 386 462 IPR036388 -
Cca03g02386 549 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 311 536 IPR014284 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 Gene3D - 463 546 IPR036388 -
Cca03g02386 549 Pfam Sigma-70 region 3 393 463 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 5 548 - -
Cca03g02386 549 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 5 548 - -
Cca03g02386 549 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 233 383 IPR013325 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 ProSitePatterns Sigma-70 factors family signature 2. 506 532 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 Gene3D - 230 382 - -
Cca03g02386 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 446 545 IPR013324 -
Cca03g02386 549 CDD Sigma70_r4 475 533 - -
Cca03g02386 549 PIRSF Sigma_factor_SigC 1 549 IPR016262 -
Cca03g02386 549 Pfam Sigma-70, region 4 481 534 IPR007630 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 PRINTS Major sigma-70 factor signature 337 350 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 PRINTS Major sigma-70 factor signature 361 369 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 PRINTS Major sigma-70 factor signature 485 497 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 PRINTS Major sigma-70 factor signature 506 521 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca03g02386 549 PRINTS Major sigma-70 factor signature 521 532 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02386 Cca-Chr3 44916759 44921367 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02386 - - gmx:100815699 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02386 03 44916759 44921367 Cca03g02386 03 44916759 44921367 ECH
Cca03g02386 03 44916759 44921367 Cca02g00437 02 9213319 9218557 PCT