Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00437 ATGGAATTCGCAAGAACCATCTTCTATTCGTCTCCACCCTTCCCTCCAAGAACCCACCAATGGCACACTCTTCCCCCATCTTCTTCCACTTCCGTTTTGATGCTTCGCGAACAAGCTTCCCCTACAGTTGCCTCTTGGTCTTCTAATTTTTCAGCACAGAATTTTCCTGCCTCAGTTCTTTTACAAGAGCAGCGAGATGAATACAGGCCTCTTTTGCACATGTCTAAGGAAGACAAGACATCAGAGGCAATTTTAAATACAAGGCAGATGGATATTGCCACTGTTCATGAAGAGAATCACACTGGAAATGCTGATCAGGTAGTACTTGAATTTAGGAAGCAACTGCATCTCTGGCCTCAATTACAGAACTTATTAAATTCCTCACAAAGAGAAGAAATTGCTGCTTCTTCAACTTTACAGCCTGTTTCTGTTGAATCGGAGAGGCATACAGATGGTGTGCAATGTAATGGAGTTTCTTTTGCTAAGAAAGCTTTGTCTACCTCAAAACGAGCATCCTCAGTAGCTGAAGACTTGAAATCAATGAAAGCTGATGATGATTCGATTCCTTTTGGTCTGGCCTCTACTAGTTTGGCTGACCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGAAGATCAAAACAAAGAAAGGTACCCAAGTCAAAAGTTAAAGATGATGAAACCTACCTTGCAAGAAAGGATGATGCACAAGAAAGGCTACGGGCAGAAAAGAAGATAAATGAAGAATTTGATCAAAATGACACCCTGCGCTTGTTCTTGTGGGGTCCTGAAACAAAACAACTTTTGACACTTGAACAAGAATCTCAACTGATTTCTCAGATACAGGATTTATTGAGATTGGAAGAATTGAAGACCAGGCTTCAATCTCAATTTGGAAGGGAACCAACTATTGCTGAATGGGCTGAGAGTGCAGGACTTAATTGTCGAATGCTGCATGCACAGCTTCACAGTGGTAACAGAAGCAGAGAAAAGCTGATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGGCGTGGTCTCAGTCTTCAGGACTTATTACAGGAGGGAAGTGTGGGTCTTATGAAGAGTGTTGAAAAATTCAATCCCATAGCTGGCTGTCGATTCGGAAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAGGCAGTGTATAGACATTCCAGGACAATCCGTCTGCCGGATAAGGTTTATATCCTATTGGGCAAGGTAATGGAGGCAAAGAAATTGTACATTCAAGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGAAAAGATTGACAAATTACTATTTTCTGCAAGAATTCCAATTTCTATGCAGCAAACTGTGTGGGCTGACCAAAATACAACTTTCCAGGAGATTACTGCAGATCCCACAACTGAGGCCACAGACGTGACTGTTGAAAAACAGCTTATGAGGCGACATGTTCTCAATGTCTTAAGTACCCTGCGCCCCAAAGAAAGGAAAATAATCCGGCTAAGATATGGTTTTGAGGATGGTGAACAGAAATCTTTATCAGAAATTGGAGACATATTTGGCTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATCCGAGCGCTATACAAGCTGAAGAAGTGCCTTGTCAAACAAGGACTGGATGCTTATGTAGACTTGCTTTTATAG 1722 0.4152 MEFARTIFYSSPPFPPRTHQWHTLPPSSSTSVLMLREQASPTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSEAILNTRQMDIATVHEENHTGNADQVVLEFRKQLHLWPQLQNLLNSSQREEIAASSTLQPVSVESERHTDGVQCNGVSFAKKALSTSKRASSVAEDLKSMKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVKDDETYLARKDDAQERLRAEKKINEEFDQNDTLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEELKTRLQSQFGREPTIAEWAESAGLNCRMLHAQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSVGLMKSVEKFNPIAGCRFGNYAFWWIRQAIRKAVYRHSRTIRLPDKVYILLGKVMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTTEATDVTVEKQLMRRHVLNVLSTLRPKERKIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00437 573 Coils Coil 238 258 - -
Cca02g00437 573 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 470 569 IPR013324 -
Cca02g00437 573 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 410 483 IPR013324 -
Cca02g00437 573 ProSitePatterns Sigma-70 factors family signature 2. 530 556 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 Gene3D - 492 572 IPR036388 -
Cca02g00437 573 Pfam Sigma-70 region 2 337 406 IPR007627 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 ProSitePatterns Sigma-70 factors family signature 1. 361 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 Gene3D - 410 487 IPR036388 -
Cca02g00437 573 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 573 - -
Cca02g00437 573 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 333 560 IPR014284 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 257 407 IPR013325 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 573 - -
Cca02g00437 573 Pfam Sigma-70, region 4 505 558 IPR007630 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 Gene3D - 254 406 - -
Cca02g00437 573 PRINTS Major sigma-70 factor signature 361 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 PRINTS Major sigma-70 factor signature 385 393 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 PRINTS Major sigma-70 factor signature 509 521 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 PRINTS Major sigma-70 factor signature 530 545 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 PRINTS Major sigma-70 factor signature 545 556 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 Pfam Sigma-70 region 3 418 485 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cca02g00437 573 PIRSF Sigma_factor_SigC 1 573 IPR016262 -
Cca02g00437 573 CDD Sigma70_r4 499 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00437 Cca-Chr2 9213319 9218557 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00437 - - gmx:100778636 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00437 02 9213319 9218557 Cca02g00437 02 9213319 9218557 ECH
Cca03g02386 03 44916759 44921367 Cca02g00437 02 9213319 9218557 PCT