Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02349 ATGGGTTCACTAGAAAGATCAAAGAAGAAGGTTCTTCTATGGAAGAAGGCCATGCTCCATTTTTCCCTATGTTTTGTGATGGGTTTTTTCACAGGCTTAGCTCCAACAGGTAAATCTTCTCTCTTTTCCACCAAAGTTGTTGTCTCAAATAGGACAGAATTTGCACCACAACCTAGTGAAATGTCACACCTCGCCACAACAAATGTCAATACAAGTTGGATTGCTCCAACGCCTAGAACCATTGAAAAGAAAAAAACAAGAACAAAGTTGCATGTTGAAGCAGAGCCCCAGTTGAAGCCTAGAAGACTCATAATCATTGTGACTCCAACAAGCACAAAGCTACCCCACCAAGCAGTGTTTTTGAGAAGGTTGGCAAATACTATAAAGCTCGTTCCTCAACCTTTGTTATGGATTGTGGTGGAGGCTAAAACCAATTCCACTGAATTGCCAGAGATACTAAGGAAGACTGGCATCATGTATAGGCATGTGGTTTTCAAGGAAAACTTCACAGAATTAGAAGCTGAACTGAATCACCAGAGACATCTTGCTCTTAAGCACATTGCGCACCACAGGCTCAATGGCATTGTACACTTCGCTGGCCTTTCCAATATTTATGATCTCCAATTCTTCCACCAGCTTAGGGATATTGAGGTCTTTGGAACGTGGCCAACTGCATTGCTAGCTGCAAACAGAAAGAAAGTGAAAATCGAAGGACCTGTATGCGATTCGTCACAAGTCATTGGTTGGCATCTAAGGAATATGAACAACGAAACTGATACAATCACTCCCCCTATTCATATTTCAAGTTTTGCATTCAATAGCTCCATCCTTTGGGACCCTGAGAGATGGGGTCGCACTTCCTCTGTTCAAGACACTTCTCAGAATTCAATCAAGTTCGTGAAGCAAGTAGTGCTAGAAGACGAGGCTAAATTAAAGGGAATTCCACCCGAGGGCTGCTCCAAAATCTTGCTCTGGCGTTTCAATTTTCGTGCCCGAACCACTTCAAAACAATAA 1014 0.425 MGSLERSKKKVLLWKKAMLHFSLCFVMGFFTGLAPTGKSSLFSTKVVVSNRTEFAPQPSEMSHLATTNVNTSWIAPTPRTIEKKKTRTKLHVEAEPQLKPRRLIIIVTPTSTKLPHQAVFLRRLANTIKLVPQPLLWIVVEAKTNSTELPEILRKTGIMYRHVVFKENFTELEAELNHQRHLALKHIAHHRLNGIVHFAGLSNIYDLQFFHQLRDIEVFGTWPTALLAANRKKVKIEGPVCDSSQVIGWHLRNMNNETDTITPPIHISSFAFNSSILWDPERWGRTSSVQDTSQNSIKFVKQVVLEDEAKLKGIPPEGCSKILLWRFNFRARTTSKQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02349 337 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 103 337 IPR029044 -
Cca03g02349 337 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 335 IPR005027 GO:0015018|GO:0016020
Cca03g02349 337 CDD GlcAT-I 102 331 IPR005027 GO:0015018|GO:0016020
Cca03g02349 337 Pfam Glycosyltransferase family 43 124 328 IPR005027 GO:0015018|GO:0016020
Cca03g02349 337 SUPERFAMILY Nucleotide-diphospho-sugar transferases 102 331 IPR029044 -
Cca03g02349 337 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9-RELATED 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02349 Cca-Chr3 44470885 44473679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02349 1 333 Glycosyltransferase AT2G37090 62.069 1.06e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02349 K20869 - gmx:100785607 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02349 03 44470885 44473679 Cca03g02349 03 44470885 44473679 ECH
Cca03g02349 03 44470885 44473679 Cca02g00856 02 23803063 23805997 PCT