Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02336 ATGAATTATAGGAGGTTAGTATATTTATTTTTATGTCTAGCAAGCCATCTATTTTGCTTTCTGATTTTCTATCTTTTGGTCTTTTTACAGCTATCAGAAATTGTTAATCAAGGTAAATTGGTGTCAGATGAAATCATCATAAATTTATTGTCAAAGAGGCTGGCTGATGGGGAAGCTAAAGGTGAATCGGGATTTATTCTTGATGGTTTTCCGCGAACAATAAAGCAAGCAGAAATATTGGAAGGGGTAACTGACATTGACTTGGTGGTCAATCTGAAGCTCCAAGAAGAAGCACTGCTTGCAAAATGCCTAGGTAGAAGAATTTGCAATCAATGTGGAGGAAATTTTAATGTTGCTTCCATTAGTGTTAAGGGTGAGAATGGGCGCCCTGGAATGGTCATGGCTCCACTTCTTCCCCCTGCACATTGTATGTCAAAGCTAATTACTCGTGCAGATGATACTGAAGCAGTAGTCAAAGAAAGGCTTCGCATATATAATGAAAAGAGTCAACCTGTGGAGGAATTTTACCGTAGTAGAGGCAAATTGTTGGAGTTTGACCTGCCAGGAGGGATCCCAGAATCTTGGCCAAAGTTGCTGCAAGCTCTTAATCTTGATGATTATGAGGAGAAGCAATCCGCTGCAGCATAA 648 0.3981 MNYRRLVYLFLCLASHLFCFLIFYLLVFLQLSEIVNQGKLVSDEIIINLLSKRLADGEAKGESGFILDGFPRTIKQAEILEGVTDIDLVVNLKLQEEALLAKCLGRRICNQCGGNFNVASISVKGENGRPGMVMAPLLPPAHCMSKLITRADDTEAVVKERLRIYNEKSQPVEEFYRSRGKLLEFDLPGGIPESWPKLLQALNLDDYEEKQSAAA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02336 215 PRINTS Adenylate kinase signature 167 181 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cca03g02336 215 PRINTS Adenylate kinase signature 150 165 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cca03g02336 215 PRINTS Adenylate kinase signature 65 81 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cca03g02336 215 Gene3D - 27 204 IPR027417 -
Cca03g02336 215 Hamap Adenylate kinase [adk]. 6 203 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cca03g02336 215 PANTHER NUCLEOTIDE KINASE 30 215 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cca03g02336 215 Pfam Adenylate kinase 30 180 - -
Cca03g02336 215 CDD ADK 29 186 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cca03g02336 215 ProSitePatterns Adenylate kinase signature. 65 76 IPR033690 -
Cca03g02336 215 PANTHER ADENYLATE KINASE 30 215 - -
Cca03g02336 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 203 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02336 Cca-Chr3 44324877 44327165 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02336 K00939 - gmx:102666238 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02336 03 44324877 44327165 Cca03g02336 03 44324877 44327165 ECH
Cca03g02336 03 44324877 44327165 Cca02g00879 02 24228326 24232793 PCT