Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02318 ATGAATGTGGTGGGCAAAGTTGGAAGCTTGATAACCCAAGGTGTCTATTCAGTTGCTACCCCTTTTCACCCCTTTGGTGGGGCTGTTGATGTCATTGTTGTTCGGCAGCAAGATGGCACGTTCCGGTGCACGCCATGGTATGTTCGGTTTGGTAAGTTTCAAGGTGTTCTCAAAGGTGCTGAAAAGATTGTTCGGATAAAAGTCAACGGGGTTGAAGCAAACTTCCACATGTATCTTGACAATTCAGGGGAGGCTTATTTTGTAAAAGAGGTGGATGATGATGGCGACAATAAAGGAATAAAGTCAAATGGTGCTCCTGAAGCTGCTGATAACTCTGAATTTAGTAAAGAAGGCGGTAGTGTTGAAATTGATAAAAATAGTAAAATTTATCTTGGTATGGATGCTACACTTGATTATCGACTTGACCATAGCATATCCGATTCAGGGGTGCTTCAGTTTACTGGCGAAGGCCGCTCCTCGGTTTTGCCGCCACTTCAAAGGGAAGAATCTGATGTTGATAGGAAATTTTTTGAATTCCAAGATGATCAATCCTCTTTTGAAGGTTCACTTGAGGTTACAGAATATGAATCTAGTCGATATGAGAATCTAGATGTGGAGAATTTGGTGGATTCACAGGGTTCCCAGCCAGAGGTGGTCTTGGTGAGTGTTGATGGTCATGTATTGACAGCCCCTATCCTAGAATCAGAAGAGAAGAATGAGGAAAATTTGAAATTAAAAACTCCTCAATTTCACCTAGGCCCAGGTGAAGGGACTGGCTTCTATGAGGGCAATAGGGAATTTATTTCCGATGAAAATGCTTGGGCTGTTGATTATGTTAGTCAGCGGGATGCTTCGAGAGTTGATGTTCCAGCTAGTAGCTATGACACTGAGGTTGGTGACACTGATGATACTACTGCTCTCCTGTTGGAAGCTCAAAGGGAGGAAGAGGAAAATTTTAGTCCCACAGAAGAAACCTTGCTGATTAAAAATCAAGAAGATCGTCATTTGCAAACTGATTCAGATGAGGTTCTATCTTGTATGAAGAGAGAGAGTGTTTTCAAAAGTTGTTTGGAATTACACGAGTTTGCTCAGCAGGCTGGAAATGCTGATTTACAAGATGTAGGTTACACATTAGAGTCTCAAAATTCAGCAGAGGTATCGAATGAAAATTGTTCAATTATTAATGAAAATGAACAAGAAAACATCAAACAATGTAGAAACAATGACGAGTTATCTCCTCTTAGTGGGCCTACTTCCTTGGTTGATCATAATTCTTTAGAATTAGAAGTAGAACTTCAAGAGGTTGATAAAGATGCATCAGGGGAGGTTGACACTGATTCTGGCACTAAGGATATTGAATGTAATGATGAACATGTTGCAGAGTCAGTATCAAATGATAAGGTAAATGATAGTCAACAAACCCATGCACTTGAAGATGCTTGTAAGAAATGTGAACTAACTGAACCTCAAATAGAAATTTCCAATGAGGAGGCCCAAAGTCGTTCTGATTTGAAATTCGAGGCCTCACTTTGTGGTCATGAACTTAAGGTGGGTATGGGTTTGGTTGCTGCTGCTGAGGTTTTTGAAGCACATCGAATATCTGTGGAGGATTTTAGAAGTTCAGCACCATCAATAATTAAGAATGAAAATCTTGTTCTGAAGATCAGAGAGAGTTATCTGCTGTGGGAAAAGGCTGCTCCTCTTGTTCTTGGAATGACTGTATTTGGTTTAGACTTGCCTGTTGATCCCAAAGATACAATTCCCGTGGGACAGGACGATGCAGTAAAGGCCACAGTTGACAATCCTGGACTAGCTTCATCTAGACGCAGATGGAGACTTTGGCCTATTCCTTTTCGAAAAGTCAAGACACTTGAGCACGCTAATAGTGATGTATCAAGTGAGGACATATTTTTAGATTCCGAGTCTGACTGGCAAACTTCTGTTGTCGAGCCATCTCCAACATCTGCTAGGCGTGACTCTCCTCGCAAGCAATTTGTGAGGACAAATGTACCCTCTAATGAGATGATAGCGTCCTTAAATCTCAAAGATGGTCAAAATTTAGTAACCTTCAGTTTCTCCTCCAGGGTTCTTGGAACACAACAGGTTGATGCTCATATATACTTATGGAAGTGGAATGCAAAAATTGTAATTTCAGATGTGGATGGAACTATTACCAAATCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTCAGCTATTGAAGAAAATGGGTACCAGCTACTGTTTTTGAGTGCTCGTGCTATTGTCCAAGCTTATCTAACCAGGAATTTTCTGCTTAACCTGATACAGGATGGAAAGACCTTACCGCATGGACCTGTTGTTATTTCACCTAACGGATTATTTCCCTCTCTTTACCGAGAAGTAATAAGAAGAGCTCCTCACGAGTTCAAGATTGCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAATCCCTTTTACGCGGGGTTTGGCAACAGAGACACGGATGAACTTAGTTACAGGAAGATAGGAATTCCAAAGGGAAAAATATTTATTATTAATCCCAAGGGTGAGGTGGCAATAAGTCATCGTATTGATGCAAAATCTTACACATCATTACACACACTCGTCGATGACATGTTCCCTCCTACTTCTTTGGTCGAGCAGGAGGACTTCAACTCATGGAATTATTGGAGAATGCCTTTTCCGGATGTTGATTAG 2748 0.4098 MNVVGKVGSLITQGVYSVATPFHPFGGAVDVIVVRQQDGTFRCTPWYVRFGKFQGVLKGAEKIVRIKVNGVEANFHMYLDNSGEAYFVKEVDDDGDNKGIKSNGAPEAADNSEFSKEGGSVEIDKNSKIYLGMDATLDYRLDHSISDSGVLQFTGEGRSSVLPPLQREESDVDRKFFEFQDDQSSFEGSLEVTEYESSRYENLDVENLVDSQGSQPEVVLVSVDGHVLTAPILESEEKNEENLKLKTPQFHLGPGEGTGFYEGNREFISDENAWAVDYVSQRDASRVDVPASSYDTEVGDTDDTTALLLEAQREEEENFSPTEETLLIKNQEDRHLQTDSDEVLSCMKRESVFKSCLELHEFAQQAGNADLQDVGYTLESQNSAEVSNENCSIINENEQENIKQCRNNDELSPLSGPTSLVDHNSLELEVELQEVDKDASGEVDTDSGTKDIECNDEHVAESVSNDKVNDSQQTHALEDACKKCELTEPQIEISNEEAQSRSDLKFEASLCGHELKVGMGLVAAAEVFEAHRISVEDFRSSAPSIIKNENLVLKIRESYLLWEKAAPLVLGMTVFGLDLPVDPKDTIPVGQDDAVKATVDNPGLASSRRRWRLWPIPFRKVKTLEHANSDVSSEDIFLDSESDWQTSVVEPSPTSARRDSPRKQFVRTNVPSNEMIASLNLKDGQNLVTFSFSSRVLGTQQVDAHIYLWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVARLFSAIEENGYQLLFLSARAIVQAYLTRNFLLNLIQDGKTLPHGPVVISPNGLFPSLYREVIRRAPHEFKIACLEDIKRLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRIDAKSYTSLHTLVDDMFPPTSLVEQEDFNSWNYWRMPFPDVD 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02318 915 SUPERFAMILY HAD-like 707 857 IPR036412 -
Cca03g02318 915 Pfam LNS2 (Lipin/Ned1/Smp2) 670 891 IPR013209 -
Cca03g02318 915 SMART lns2 715 871 IPR031315 -
Cca03g02318 915 Pfam Lipin/Ned1/Smp2 multi-domain protein middle domain 507 587 IPR031703 -
Cca03g02318 915 MobiDBLite consensus disorder prediction 97 119 - -
Cca03g02318 915 Pfam lipin, N-terminal conserved region 1 96 IPR007651 -
Cca03g02318 915 PANTHER PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1 915 - -
Cca03g02318 915 PANTHER LIPIN 1 915 IPR026058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02318 Cca-Chr3 44143134 44152370 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02318 K15728 - gmx:100780784 1472.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02318 03 44143134 44152370 Cca02g00901 02 24589262 24597679 PCT