Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00901 ATGAATGTGGTAGGCAAAGTTGGAAGCTTGATAACTCAAGGTGTGTACTCAGTTGCTACCCCATTTCACCCCTTTGGTGGCGCTGTTGATGTGATTGTTGTTCAGCAACAAGATGGGACATTTCGAAGCACACCTTGGTATGTTCGGTTTGGTAAATTTCAGGGTGTTCTCAAAGGTGCGGAAAAGATTGTTCGGATAAATGTTAATGGCGTTGAAGCCAATTTTCATATGTATCTTGACAATTCGGGTGAGGCTTATTTTTTGAAGGACGTGGATGATGATAAAGGGGTTGAGTCAATTGAGGTTGGTCAAAATTCTAGAGACAAAAAGCATAGCTATTTGAGTAATGGTCATAGACTTGATCATAGCATCTCAGATTCCGGGGTGCTTCGGTTGAAAGATGAGGGTGATTCCCCAGTTGCGCCTCGGATTCAAAGGGCTGAATCTGATGTTGATAGGAGATTTTATGAATTTCCAGATGATCGATCTTCTTTTGAAGATTCAGTTGAGTTGTCAGAGTATGAGTCTAATTCATACGAGAGCCTAGAGGGAGACAATTGTGTGGAGTCACAAGGTTCACATCCAGAGATGGTATTGGTAAGTGTTGATGGTCATATATTGACGGCTCCTATCTCCGAATCAGAGCAGACTGAGGAGAATGTGCAGTTAAAAACTCCTCAATTTCATCTGGGACCAGGTGAAGAGACCGACTTATGTGAAGGCAATGGAGAGTTAAGTACTGGTGAAAATGCTTGGGCTGCTGATTATATTAATCAGCTGGATGCCAGAACGACTGATGTCCAACCCAGACACTATGAGACTAATGGTAATGATAATACTTCTAAGCTCTTGCTTGAAGTTTGTCAAGGAGAGGAGGTACATGTTTGTCAAGCACAGGAAACCTTGGAAGTTAAAAATAAAGATCATATGAAAAATGAATCAGAAGGGGCTAAATCAAGAATCAAGAGGGAGACTGTTTTCAAAAGCTGTTTGGAGCTACAAGATTTTGGTCATCAGGCAGGAAATGGTGATATCCATGATATAGGTTCATCATTGGAGAATCAAAATCCCACAGAGGAATCTAATGCAAGTTGTCCTGTAGTAGATGAAAATGAACAAGAGAGCACTGTGCAATCAAAAAATGGTGACGAGTTATCACCTCCTAGTAATTCTACTTGTAATGGCCAAAGATCTCTAAAACCAGAATTGGAAATTCAAGAAGTTGAGAAAAATGCATCTGGAGAGGTTGAAACTGCTTCTGGCTCTCGTTCTGTTACTACTGATACTGAACAGAATGGTGAACATGTTGACAAGTCAGTATCAAATGATGAGGTAGATGAGAGTCAGCAGACCCTTGCACTCAAAGATGTTGGGGCTACAAGTGAGGTTGTGGAACCTCAAACAGAAACTAAGAATAAAGGGGATCAAAGCCATTTTGGTTTGGGATTTGAGATCTCACTTTGTGGTCATGAACTTAAGGTGGGCATGGGTTCAGTAGCTGCTGCTGAAGTGTTTGAAGCACATCGCATATCTGCAGTTGACTTCACAAGTTCTGCTCCATCAATAATTAAAAATCAAAATCTCGTTATCAAGTTTAAAGAGAGGTACTTGATGTGGGAAAAGGCTGCTCCTCTAGTTCTTGGAATGGCTGTTTATGGTTTAGATTTACCTGTTGAGCCCAAGGATACAATTCCTGTGGAACAGGATCATGCATTGAAGTCCAGGGATGATGATCAAGGATCATCTTCGTCTGGACGCAGATGGAGACTTTGGCCTATTCCTTTTCGAAAGGTCAAAACATTTGAGCATACTAATAACAACTCATCTAATGAGGAGGTATTTCTAGATTCTGAGTCTGGGTCTTTTGCAGACCCAACTCCATCATCCAGTACCCAGGGATCTCCGCATAAGCAATTTCTAAGAACAAATGTTCCCACTAATGAGCAGATAGCATCCTTAAATCTCAAAGATGGTCAGAATTTGGTAACCTTCAGTTTCTCTACAAGAGTTCTTGGAACACAACAGGTTGATGCTCATATTTATTTATGGAAGTGGAATGCAAGAATTGTAATTTCAGACGTTGATGGAACCATTACCAAGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTCTGCCATTAAGGAAAATGGATACCAGCTACTTTTTCTGAGTGCCCGAGCAATTGTCCAGGCATATCTAACCAGAAACTTCTTGCTTAACCTGAAGCAGGATGGAAACACCTTACCAAATGGACCTGTTGTTATCTCACCTGATGGATTATTTCCCTCACTTTTCAGAGAAGTGATAAGAAGGGCACCTCACGAGTTCAAGATTGCTTGTTTAGAGGATATCAAGAGACTTTTCCCATCTGACTATAATCCATTCTACGCGGGATTTGGCAATAGAGATACAGATGAACTTAGTTACAGAAAGATCGGAATCCCGAAGGGAAAAATATTCATTATTAACCCTAAGGGCGAAGTGGCTATTAGTCATCGAATTGGTGCAAAATCATATACATCGTTACATACCCTCGTCAATGACATGTTTCCTCCAACATCTTTGGTCGAGCAGGAGGACTTCAACTCATGGAATTATTGGAGAACGCCATTGCCAGATGTTGATTAG 2670 0.4112 MNVVGKVGSLITQGVYSVATPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKGAEKIVRINVNGVEANFHMYLDNSGEAYFLKDVDDDKGVESIEVGQNSRDKKHSYLSNGHRLDHSISDSGVLRLKDEGDSPVAPRIQRAESDVDRRFYEFPDDRSSFEDSVELSEYESNSYESLEGDNCVESQGSHPEMVLVSVDGHILTAPISESEQTEENVQLKTPQFHLGPGEETDLCEGNGELSTGENAWAADYINQLDARTTDVQPRHYETNGNDNTSKLLLEVCQGEEVHVCQAQETLEVKNKDHMKNESEGAKSRIKRETVFKSCLELQDFGHQAGNGDIHDIGSSLENQNPTEESNASCPVVDENEQESTVQSKNGDELSPPSNSTCNGQRSLKPELEIQEVEKNASGEVETASGSRSVTTDTEQNGEHVDKSVSNDEVDESQQTLALKDVGATSEVVEPQTETKNKGDQSHFGLGFEISLCGHELKVGMGSVAAAEVFEAHRISAVDFTSSAPSIIKNQNLVIKFKERYLMWEKAAPLVLGMAVYGLDLPVEPKDTIPVEQDHALKSRDDDQGSSSSGRRWRLWPIPFRKVKTFEHTNNNSSNEEVFLDSESGSFADPTPSSSTQGSPHKQFLRTNVPTNEQIASLNLKDGQNLVTFSFSTRVLGTQQVDAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVARLFSAIKENGYQLLFLSARAIVQAYLTRNFLLNLKQDGNTLPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKRLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRIGAKSYTSLHTLVNDMFPPTSLVEQEDFNSWNYWRTPLPDVD 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00901 889 MobiDBLite consensus disorder prediction 341 475 - -
Cca02g00901 889 MobiDBLite consensus disorder prediction 617 639 - -
Cca02g00901 889 PANTHER LIPIN 1 889 IPR026058 -
Cca02g00901 889 MobiDBLite consensus disorder prediction 413 429 - -
Cca02g00901 889 PANTHER PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1 889 - -
Cca02g00901 889 SUPERFAMILY HAD-like 681 831 IPR036412 -
Cca02g00901 889 MobiDBLite consensus disorder prediction 430 444 - -
Cca02g00901 889 Pfam LNS2 (Lipin/Ned1/Smp2) 643 865 IPR013209 -
Cca02g00901 889 Pfam lipin, N-terminal conserved region 1 95 IPR007651 -
Cca02g00901 889 MobiDBLite consensus disorder prediction 348 399 - -
Cca02g00901 889 MobiDBLite consensus disorder prediction 565 583 - -
Cca02g00901 889 Pfam Lipin/Ned1/Smp2 multi-domain protein middle domain 483 591 IPR031703 -
Cca02g00901 889 SMART lns2 689 845 IPR031315 -
Cca02g00901 889 MobiDBLite consensus disorder prediction 565 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00901 Cca-Chr2 24589262 24597679 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00901 K15728 - gmx:100795884 1569.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02318 03 44143134 44152370 Cca02g00901 02 24589262 24597679 PCT