Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02316 ATGATGAAGAAACAACTGACAGGTATAAGGGGTGATTCTCCCTTACAATCGGCAATCCGAGGTGGAAATTTGGATTTGGTTCTGGAAATCATCTCTCAGAGTCCAGAGGAAGAATTGAAGGAGTTGCTTTCAAAGGGAAACAACTCTTGTGAAACTGCCCTGTATGTTGCTGCTGAAAATGGTCATCTTGATATAATGAAGGAATTGATTAGATATCATGATATTGGGTTGGCCAGCTCCAAAGCTAGAAATGGATTCGATGCATTCCACATTGCTGCTAAAAATGGAAACTTGGAAATATTAAAGGTCCTCATGGAGGCCATTCCTGAAATTTCAATGACCGTTGATCTGTCAAACACTACTGCATTGCATACTGCTGCAGCACAAGGGCACATTGAAGTTGTAAATTTTCTCTTGGAAAAAGGTAGCAGTCTGGTAACTATTGCAAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAACGGCCATGTGGAGGTTGTCAGTGCACTTCTGAGCAAAGAACCTGAAATTGCAATGAGAATTGATAAAAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTAGTGGATGAGCTTGTGAAACCGAATCCATCTTTGGTTAATATGGTGGATGCCAAGGGAAATACTGCACTCCATATAGCAACCCGGAAGGGTCGTTTACAGGTTGTTCAGAAGCTACTAGATTGCAGGGAAATAGACACAGATGTTATTAACAAATCTGGAGAAACAGCTTTAGATACTGCAGAGAAAAATGGTCGCTTGGACATCGCCAATTTTCTGCAGCATCGTGGAGCTCAAGGTGCCAAGTCCATCAAGTCACCTACGACAAACACAGCCCTTGAACTGAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAATCAGCTGGAACACACATTTAAAACACAAAGACGCATGCAAGGTATAGCAAAACGAATTAACAAAATGCACACTGAGGGGCTTAACAATGCAATCAACTCCAACATTGTTGTTGCAGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTAACATCCCAGGCCAGTATCCTGAGAAGCTAAATGATCTCTCTCCTAAAATGTCTCCTGGGGAAGCATACATTGCTCATGATATTGGATTCCTGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCTGTGGTTGTTATTGAGAGGAAAGCCAAGAGACAAATGATGGCAATTATAAATAAGTTGATGTGGGTTGCCTGTGTGCTAATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGATCATAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCACCGACTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAATCATTGTCTTTGTCAATGATGTCAGGTTCCGAGAATGAGTATAATAAGACAGTGTACGCAATATAA 1569 0.413 MMKKQLTGIRGDSPLQSAIRGGNLDLVLEIISQSPEEELKELLSKGNNSCETALYVAAENGHLDIMKELIRYHDIGLASSKARNGFDAFHIAAKNGNLEILKVLMEAIPEISMTVDLSNTTALHTAAAQGHIEVVNFLLEKGSSLVTIAKSNGKTVLHSAARNGHVEVVSALLSKEPEIAMRIDKKGQTALHMAVKGQNLELVDELVKPNPSLVNMVDAKGNTALHIATRKGRLQVVQKLLDCREIDTDVINKSGETALDTAEKNGRLDIANFLQHRGAQGAKSIKSPTTNTALELKRTVSDIKSGVHNQLEHTFKTQRRMQGIAKRINKMHTEGLNNAINSNIVVAVLIATVAFAAIFNIPGQYPEKLNDLSPKMSPGEAYIAHDIGFLIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAIINKLMWVACVLISVAFIAMSYIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSLSLSMMSGSENEYNKTVYAI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02316 522 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Cca03g02316 522 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Cca03g02316 522 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Cca03g02316 522 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Cca03g02316 522 Pfam Ankyrin repeats (3 copies) 81 145 IPR002110 GO:0005515
Cca03g02316 522 Pfam Ankyrin repeats (3 copies) 216 279 IPR002110 GO:0005515
Cca03g02316 522 Pfam Ankyrin repeats (3 copies) 152 209 IPR002110 GO:0005515
Cca03g02316 522 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 522 - -
Cca03g02316 522 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
Cca03g02316 522 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Cca03g02316 522 Pfam Domain of unknown function 334 449 IPR026961 -
Cca03g02316 522 Gene3D - 3 341 IPR036770 -
Cca03g02316 522 SMART ANK_2a 220 250 IPR002110 GO:0005515
Cca03g02316 522 SMART ANK_2a 254 285 IPR002110 GO:0005515
Cca03g02316 522 SMART ANK_2a 152 181 IPR002110 GO:0005515
Cca03g02316 522 SMART ANK_2a 186 216 IPR002110 GO:0005515
Cca03g02316 522 SMART ANK_2a 84 113 IPR002110 GO:0005515
Cca03g02316 522 SMART ANK_2a 49 77 IPR002110 GO:0005515
Cca03g02316 522 SMART ANK_2a 118 148 IPR002110 GO:0005515
Cca03g02316 522 SMART ANK_2a 10 41 IPR002110 GO:0005515
Cca03g02316 522 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Cca03g02316 522 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Cca03g02316 522 SUPERFAMILY Ankyrin repeat 12 277 IPR036770 -
Cca03g02316 522 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 522 - -
Cca03g02316 522 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Cca03g02316 522 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Cca03g02316 522 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02316 Cca-Chr3 44123010 44125968 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02316 2 511 Miscellaneous Gene Families AT1G07710 64.188 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02316 - - gmx:100802370 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02838 02 49777826 49782419 Cca03g02316 03 44123010 44125968 ECH
Cca03g02316 03 44123010 44125968 Cca03g02316 03 44123010 44125968 ECH