Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02838 ATGGCCTCCTCCTCAGCCCAACCAGGAACCGGAGTGGAGGACCCCCCACCGGCGGCCCAGAACCCTCTGTCGGAGATAtccccgtcgccgtcgccgtcgtcagcgacggcgccggcgctggtgctgtcgAACTCGGGGAAGCGCATGGACCAGGCGGGGAAGAAGAAGTACGTGAAGCAGGTGACGGGGCGGCACAACGACACGGAGCTCCACCTGGCGGCGCAGAGGGGCGACGTGGGCGCCGTCAGGCAGATCCTCCTGGACGTCGATTCTCAGATCATGGGCACTCTCGGCGGCGACGACGGCGGCGATCTGAACGCGGAGATTGCGGAGGTGCGCGCTTGCCTCGTCAACGAAGAGAACGAGCTCGGCGAGACCGCCTTGTTCACCGCCGCTGAGAGGGGACACCTGGATGTGGTCAAGGAATTGCTTAACCATTCCACTGCTCAGACTGTTTCCAAAAAGAACCGATCCGGTTTTGATCCTTTGCATATTGCAGCTAGCCAAGGACACCACCCCATTGTTCAGGTTTTGCTAGATTATGACACGGGATTGAGCAGAACAATTGGTCCGTCCAATTCCACGCCGCTTATAACTGCGGCAACGAGAGGGCACACAGAAGTGGTGAATGAGCTTCTGTCAAAGGACCGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAATGCGTTGCATTTAGCGGCTCGTCAGGGTCATGTGGAGATTGTGAAAGCCTTACTCAGTAAAGATCCACAGTTGGCTCGCAGGACCGACAAGAAAGGACAAACTGCATTGCATATGGCAGTAAAAGGGCAGAGTTGTGATGTGGTGAAATTGCTTCTTGAGGCGGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGTAACACAGCGCTACATGTTGCAACCAGGAAAAAGCGAGTAGAGATAGTGACCGAGTTATTACATCTGCCAGACACCAATGTTAATGCGTTGACCAGAGACCACAAAACAGCTCTTGACATTGCCGAAAACCTTCCACTCTCTGAAGAGGCATCAGATATAAAGGACTGTCTTTCTCGATATGGAGCACTCAGAGCTAATGAGCTCAACCAACCAAGGGACGAACTGAGGAAGACCGTTACTCAAATTAAGAAAGATGTCCACACCCAACTTGAACAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCCAAAGAGCTTAGGAAACTCCACAGGGAAGGAATTAACAATGCAACAAACTCAGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCGTGCCTGGTGGGGATCATGATGACGGCTCAGCAGTAGTAGCAACTTATGCTGCTTTTAGAATCTTCTTTGTATTTAACGCTATTGCACTTTTCACATCTTTGGCTGTTGTGGTTGTTCAAATTACTTTGGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTAGTGGAGGTGATCAACAAGCTCATGTGGTTGGCTTCTGTCTGTACTTCAGTGGCATTCATTGCCTCTTCTTACATAGTTGTGGGTAGGAGGAATGAGTGGGCCGCAATTCTTGTTACATTAGTTGGAGGGGTGATCATATCTGGCGTTCTTGGCACTATGACTTACTATGTAGTGAGGTCCAAGAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAGCTAGCCAGGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCCAATTCCGAGGTTGATCGGATATATGCCCTTTGA 1761 0.4781 MASSSAQPGTGVEDPPPAAQNPLSEISPSPSPSSATAPALVLSNSGKRMDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVDSQIMGTLGGDDGGDLNAEIAEVRACLVNEENELGETALFTAAERGHLDVVKELLNHSTAQTVSKKNRSGFDPLHIAASQGHHPIVQVLLDYDTGLSRTIGPSNSTPLITAATRGHTEVVNELLSKDRSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLEADAAIVMLPDKFGNTALHVATRKKRVEIVTELLHLPDTNVNALTRDHKTALDIAENLPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDHDDGSAVVATYAAFRIFFVFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRNEWAAILVTLVGGVIISGVLGTMTYYVVRSKRSRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02838 586 Pfam Ankyrin repeats (3 copies) 70 182 IPR002110 GO:0005515
Cca02g02838 586 Pfam Ankyrin repeats (3 copies) 258 323 IPR002110 GO:0005515
Cca02g02838 586 Pfam Ankyrin repeats (3 copies) 192 251 IPR002110 GO:0005515
Cca02g02838 586 ProSiteProfiles Ankyrin repeat profile. 123 155 IPR002110 GO:0005515
Cca02g02838 586 SUPERFAMILY Ankyrin repeat 70 340 IPR036770 -
Cca02g02838 586 ProSiteProfiles Ankyrin repeat region circular profile. 158 180 - -
Cca02g02838 586 ProSiteProfiles Ankyrin repeat profile. 294 327 IPR002110 GO:0005515
Cca02g02838 586 ProSiteProfiles Ankyrin repeat profile. 260 292 IPR002110 GO:0005515
Cca02g02838 586 ProSiteProfiles Ankyrin repeat region circular profile. 260 287 - -
Cca02g02838 586 Gene3D - 254 298 IPR036770 -
Cca02g02838 586 MobiDBLite consensus disorder prediction 1 38 - -
Cca02g02838 586 ProSiteProfiles Ankyrin repeat region circular profile. 226 249 - -
Cca02g02838 586 MobiDBLite consensus disorder prediction 24 38 - -
Cca02g02838 586 ProSiteProfiles Ankyrin repeat profile. 158 180 IPR002110 GO:0005515
Cca02g02838 586 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 31 580 - -
Cca02g02838 586 ProSiteProfiles Ankyrin repeat region circular profile. 123 147 - -
Cca02g02838 586 PANTHER CASKIN 31 580 - -
Cca02g02838 586 Pfam Domain of unknown function 408 514 IPR026961 -
Cca02g02838 586 Gene3D - 299 352 IPR036770 -
Cca02g02838 586 ProSiteProfiles Ankyrin repeat profile. 226 258 IPR002110 GO:0005515
Cca02g02838 586 SMART ANK_2a 294 324 IPR002110 GO:0005515
Cca02g02838 586 SMART ANK_2a 192 221 IPR002110 GO:0005515
Cca02g02838 586 SMART ANK_2a 158 187 IPR002110 GO:0005515
Cca02g02838 586 SMART ANK_2a 123 152 IPR002110 GO:0005515
Cca02g02838 586 SMART ANK_2a 226 255 IPR002110 GO:0005515
Cca02g02838 586 SMART ANK_2a 260 289 IPR002110 GO:0005515
Cca02g02838 586 SMART ANK_2a 65 94 IPR002110 GO:0005515
Cca02g02838 586 Gene3D - 183 253 IPR036770 -
Cca02g02838 586 Gene3D - 43 182 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02838 Cca-Chr2 49777826 49782419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02838 20 586 Miscellaneous Gene Families AT3G12360 80.986 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02838 - - gmx:100777929 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02838 02 49777826 49782419 Cca03g02316 03 44123010 44125968 ECH
Cca02g02838 02 49777826 49782419 Cca02g02838 02 49777826 49782419 ECH