Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02291 ATGGTGGGTGTTATTTCGTTGGTAACAGGGATGCATGGTCCGAGTGGGTTTGGCTCAGCCTCCACTGCTGAACAGGTTACTCAAGGAATTCATGCCAGCAACCTCACTGCAATCATCACAGGAGGAGCAAGTGGTATAGGGTTGGAGACAACAAGAGTATTGGCTCTTCGGAAGGTGCATGTCATCATTGCAGCACGAGACATGGCGTCTGCAAAGAAAGCCAAACAAGATATACTTGAGGACAATAAGTCTGCCCGAATAGACATAATGAAGCTTGACCTATGCTCAGTCAATTCTGTTAGATCATTTGTCGACAACTTCATTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTGATGTTCTGCCCCTTCAAGCTCTCAGAGGATGGGGTTGAGATGCAGTTTGCAACAAACCATCTTGGCCATTTCCTCTTGACAAACCTGCTACTTGACAAAATGAAACAAACTGCAAAAGCCACTGGAATAGAGGGCCGGATCATAAATCTGTCATCAATTGCTCATAACTACACTTACAGAAAGGGGATTAGATTCAATAAGATCAATGAGCGAAAAGGTTATGGTAAGAAGAAGGCGTATGGACAATCCAAGTTAGCTAACATATTACATACAAATGAGCTTTCTCGTCGCCTGCAGGAAGAGGGTGTGAACATCACAGCCAACTCGGTCCATCCAGGAGTTATCATGACTCCTCTTATGAGACATTCTTCTTACCTTATGCACTTCTTGAAGGTATTCACATTCTACATATGGAAGAACGTTCCCCAGGGAGCAGCTACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTCACGGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTGCATTTGGCAAAAGCAAACAGTTAGCAAAGAAACTATGGGATTTCAGTAACGAGTTGATCGAGTCAATTTCAAAGGTTTGA 972 0.4372 MVGVISLVTGMHGPSGFGSASTAEQVTQGIHASNLTAIITGGASGIGLETTRVLALRKVHVIIAARDMASAKKAKQDILEDNKSARIDIMKLDLCSVNSVRSFVDNFIALDLPLNILINNAGVMFCPFKLSEDGVEMQFATNHLGHFLLTNLLLDKMKQTAKATGIEGRIINLSSIAHNYTYRKGIRFNKINERKGYGKKKAYGQSKLANILHTNELSRRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKVFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFVDCNQCKPSAFGKSKQLAKKLWDFSNELIESISKV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02291 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Cca03g02291 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Cca03g02291 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Cca03g02291 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Cca03g02291 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Cca03g02291 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Cca03g02291 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Cca03g02291 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Cca03g02291 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Cca03g02291 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Cca03g02291 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Cca03g02291 323 Gene3D - 27 320 - -
Cca03g02291 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Cca03g02291 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02291 Cca-Chr3 43860214 43866706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02291 38 296 Acyl Lipid Metabolism Gene Families AT1G63380 24.818 4.13e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02291 K11153 - gmx:100801849 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02291 03 43860214 43866706 Cca03g02291 03 43860214 43866706 ECH
Cca03g02291 03 43860214 43866706 Cca02g00932 02 25236196 25240646 PCT