Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00932 ATGGTGGGTATCTTTTCGTTGGTTACAGGGAGGCCTGGACCTAGTGGTTTCGGATCTGCCTCAACTGCTGAACATGTTACTGAAGGAATTGATGCCAGCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGCATTGGGTTGGAGACAGCGCGGGTGTTGGCTCTTCGAAAGGCCCATGTCATTATTGGTGCAAGAAACATGCAATCTGCAAAGGAAGCAAAACAACTCATTCTGCAGGAAAACGAGTCAGCTCGTGTGGACATCATGAAGCTTGACCTCTGCTCAGTGAATTCTGTCAGATCATTTGTGGACAACTTCATTGCTCTTGGTCTTCCTCTCAACATTTTAATAAACAATGCTGGAGTCATGTTCTGCCCCTATCAGAAAACAGAAGATGGGTTCGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTCCTCTTGACGAACCTTCTTCTTGACAAGATGAAACAAACCGCAAAAACCACTGGAATTGAGGGCAGGATCATAAATCTGTCTTCAATTGCTCACGTTTACACCTACGAAGAGGGGATTCGATTTGATAACATCAATGATGAAGATGGATACTCTGATAAGAAAGCCTATGGGCAGTCCAAGCTGGCCAACATATTACACGCAAACGAGCTTTCTCGTCGCTTCCAGGAAGAGGGTGTTAACATCACAGCCAACTCAGTTCATCCCGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTTATGAACTTTCTGAAGATGTTCACCTTCTTCATGTGGAAGAGCATACCCCAGGGAGCAGCCACAACGTGCTATGTTGCTATACACCCCAACCTGAAAGGGATAACCGGGAAGTACTTTCTGGATTGTAACGAGTTTCAACCAAGTGCACTTGCTTCAAACCAACTCTTAGGAAGGAAACTCTGGGATTTTAGCAACAAGTTGATCAATTCACTTTCAAAACCTTGA 972 0.4465 MVGIFSLVTGRPGPSGFGSASTAEHVTEGIDASNLTAIITGGASGIGLETARVLALRKAHVIIGARNMQSAKEAKQLILQENESARVDIMKLDLCSVNSVRSFVDNFIALGLPLNILINNAGVMFCPYQKTEDGFEMQFATNHLGHFLLTNLLLDKMKQTAKTTGIEGRIINLSSIAHVYTYEEGIRFDNINDEDGYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFFMWKSIPQGAATTCYVAIHPNLKGITGKYFLDCNEFQPSALASNQLLGRKLWDFSNKLINSLSKP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00932 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Cca02g00932 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Cca02g00932 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Cca02g00932 323 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 319 - -
Cca02g00932 323 PANTHER RETINOL DEHYDROGENASE 3 319 - -
Cca02g00932 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Cca02g00932 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Cca02g00932 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Cca02g00932 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Cca02g00932 323 Gene3D - 27 320 - -
Cca02g00932 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Cca02g00932 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Cca02g00932 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00932 Cca-Chr2 25236196 25240646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00932 35 242 Miscellaneous Gene Families AT2G29340 29.493 1.05e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00932 K11153 - gmx:100807056 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00932 02 25236196 25240646 Cca02g00932 02 25236196 25240646 ECH
Cca03g02291 03 43860214 43866706 Cca02g00932 02 25236196 25240646 PCT