Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02278 GTTTCTTCTCCTACAATAATTGTTGAAAGAGCAGGGTCCTTTGCTTGGGCACATAAAAGCTGGAGAGTTAGAGAAGAGTTTACCCGAACTGTCACAGCTGCAATTAACCTATTTTCATCTACTGAGCTTCCACTTCAACGGGCTATCCTTCCCCCTGTTTTGCATTTGCTTAATGATCCAAATCCTGCTGTTAGGGAAGCTGCTATTTTGTGCATTGAGGAGATGTATACACAAGCTGGGCCTCAATTTCGTGATGAACTTCACCGCCACAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTAGAGGGAATTCAACCAAAAGTTCGCTCTTCAGATGGTATTCCTGGTGGATATATCACTGGAGAAATTAAGCATTTGAGTGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCCTCAAGGGAGACATCTCTTTTTGGAGGAGAAGGTGACATCACTGAGAAACCCATAGACCCTGTCAGGGTGTACTCAGATAAGGAGTTAATCAGGGAGTTTGAGAAGATTGCATCTACCCTTGTGCCTGAAAAAGACTGGTCAATTCGAATTGCTGCTATGCAAAGAGTTGAAGGCCTTGTTCTAGGAGGTGCTGTGGATTATCCTTGTTTTCGTGGGCTTCTGAAGCAACTTGTTGGACCTTTAAGCACACAATTGTCAGATCGTAGATCTACCATCGTGAAGCAGGCTTGCCATCTATTGTGCTTTTTGTCAAAGGAACTCTTGGGTGATTTCGAAGCATGTGCTGAAATGCTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCCCGTATAGCTGATTGTGCAAAAAATGATCGCAATGCAGTACTTCGTGCAAGGTGTTGTGAATATGCTCTTTTGGTCCTAGAACATTGGCCTGATGCACCAGAAATACATCGATCAGCTGATTTATATGAAGATCTGATAAAATGCTGTGTTTCAGATGCAATGAGTGAGGTACGGTCTACTGCACGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGGTCTCGTCGTCTATTATCATCCTTTGACCCTGCTATTCAACGGTTAATAAATGAAGAGGATGGAGGAATACATCGGCGACATGCTTCACCTTCCATTCGAGATAGAGGTGCACTGGCTTCATTACCCAGTCAAGCCTCTGCTCCCTCTAATCTACCTGGTTATGGAACTTCTGCTATTGTCGCAATGGATAGAAGTTCAAGTATATCATCAGGGACATCTATCTCCTCTGGCATACTTCTTTCACAAGCTAAGTCACTTGGTAAGGGTACAGAACGTAGTTTGGAAAGCATGTTACATGCAAGCAAACAGAAAGTTACTGCTATAGAAAGCATGCTTAGAGGCCTGAATTTGTCTGATAAGCACAATTCATCTTCTCTCCGGTCATCAAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCTGCTGTCCCTGCATCTAATCATATGACAAGCTCTTTTACAACAGAATCTATTGCTTCTAGCGTCAATAAAGGTAATAACCGAAACGGTGGTCTAGGTTTGTCTGACATAATCACTCAGATTCAAGCTTCAAAAGATTCTGCCAAGTTATCTTATCACAGCAATGTTGGTATTGAGCCTTTATCATCATTATCATCATATTCAAGTAAAAGGGCCTCTGAACGATTACAAGAAAGAAGTTCTGTCGATGATAACAGTGATATTAGGGAGGCTAGGCGATTTATGAACATCAACACTGATAAGCAGTATTTTGACGCCCATTATAGAGATGGAAACTTTAGGGAATCACATAATAGTTCTGTGCCTAATTTCCAGAGACCACTATTGAGAAAGAATGTGGCTGGACGGATGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAATCAGCTATCTCTCGGAGAGATGTCAAATTATGCAGATGGACCAGCATCTCTTCATGAAGCTTTGAGTGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTCATTCTCTGTTGCAGCAGGGTCCAAAGGGAACTCTAGAAGTTGTCCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGATCCCCATCATAAAGTTGCACAGGCGGCTCTTTCAACACTTGCAGATATTGTTCCAGCATGTCGAAAGCCTTTTGAGGGTTACATGGAAAGAATATTACCCCATGTGTTTTCTCGGTTAATTGACCCTAAAGAACTTGTCAGGCAGCCATGTTCTACAACTTTGGAAGTTGTTAGCAAAACTTACAGTATAGATTCTCTCTTACCTGCATTATTACGCTCACTAGATGAACAAAGGTCTCCAAAGGCTAAATTGGCTGTAATTGAATTTGCAATCAATTCCTTTAACAAACATGCTATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCTATTACATGCATTATATCGGTGTACTCTCACTTTGATTCAACAGCAGTTCTTAATTTCATTTTAAGTTTGTCAGTTGAAGAACAAAATTCTTTGAGACGAGCATTGAAACAATACACCCCTCGCATTGAAGTAGACCTAATAAACTATCTGCAGAACAAGAAAGAGAGACAACGTTCTAATAAGTCTTCCTACGACCCATCTGATGTTGTGGGAACATCCTCGGAAGATGGATATATTGGTTACTCTAGGAAGGCAAATTACCTGGGAAGATATTCTGCTGGTTCCCTTGATGGTGATGGTGGAAGGAAATGGAGTTCGCAAGATTCAACACTGATAAAAGCCAGTCTTGGTCAAGCAGCTTCTGGTGAAACTCGGGAACATATGTTTCATAATATTGAGACCGATCCAAATAGTGGTAGTCTTGGTTTGAAAAATAAAGATCTTGCTTATGCAGGCAATCCAATGGGTCAAAACTTTGTCTCTCAAACTAGCCAACATGGACATGTGGACACTAGCATGAACTTAGAGGGTCTTTCAACTCCTCGTCTAGATGTAAACGGTTTGACGTCCGTAGAGCATTTAAATGTTGCTGAAGGCTATGTAAATGAAAAAGAACATCCTTCTGATTTGGAACTTAATCATCACTCAACTGAGGATGTAAAGATTAACTCCATGGCAGACACAGGACCCAGCATTCCTCAAGTTCTTCATATGATATGCTGTGGGGGTGATGGAAGTCCTATTTCAAGTAAACGCATTGCACTTCAGCAATTAGTTCAAGCTTCTCTAACAAATAATCATTCTGTTTGGACCACGTACTTCAATCAGATTTTGACAGTTGTGCTCGAGGTGCTGGATGATTCAGATTCCTCAGTCAAAGAGCTTGCTCTTTCATTGATAGTTGAAATGCTTAAAAACCAGAAGGGTGCCATGGAGAATTCTGTTGAGATTGTAATTGAGAAGCTGCTTCACGTAACAAAAGATATCATTCCTAAGGTCTCAAATGAAGCAGAGCACTGCTTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTCTGCTGGTTACTGAGGATGAGAAATCACTCGTCATTTGCATAAATTGCTTAACAAAGCTTGTGGGCCAACTTTCTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTTTGCCTGCCCTTTTTGAAGCTTTTGGTAACCAGAGTGCAGATGTTCGTAAGACCGTTGTTTTCTGTCTGGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATTTGCAAGGGCTTAATAGCACACAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAAGCCAGGACAGGCAAAGCAATTGATGCCGCTCATGATTAG 4011 0.4141 VSSPTIIVERAGSFAWAHKSWRVREEFTRTVTAAINLFSSTELPLQRAILPPVLHLLNDPNPAVREAAILCIEEMYTQAGPQFRDELHRHNLPSSLVKDINARLEGIQPKVRSSDGIPGGYITGEIKHLSVNPKKSSPKAKSSSRETSLFGGEGDITEKPIDPVRVYSDKELIREFEKIASTLVPEKDWSIRIAAMQRVEGLVLGGAVDYPCFRGLLKQLVGPLSTQLSDRRSTIVKQACHLLCFLSKELLGDFEACAEMLIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIHRSADLYEDLIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLLSSFDPAIQRLINEEDGGIHRRHASPSIRDRGALASLPSQASAPSNLPGYGTSAIVAMDRSSSISSGTSISSGILLSQAKSLGKGTERSLESMLHASKQKVTAIESMLRGLNLSDKHNSSSLRSSSLDLGVDPPSSRDPPFPAAVPASNHMTSSFTTESIASSVNKGNNRNGGLGLSDIITQIQASKDSAKLSYHSNVGIEPLSSLSSYSSKRASERLQERSSVDDNSDIREARRFMNINTDKQYFDAHYRDGNFRESHNSSVPNFQRPLLRKNVAGRMSAGRRRSFDDNQLSLGEMSNYADGPASLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGTLEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKELVRQPCSTTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHAMNPEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLINYLQNKKERQRSNKSSYDPSDVVGTSSEDGYIGYSRKANYLGRYSAGSLDGDGGRKWSSQDSTLIKASLGQAASGETREHMFHNIETDPNSGSLGLKNKDLAYAGNPMGQNFVSQTSQHGHVDTSMNLEGLSTPRLDVNGLTSVEHLNVAEGYVNEKEHPSDLELNHHSTEDVKINSMADTGPSIPQVLHMICCGGDGSPISSKRIALQQLVQASLTNNHSVWTTYFNQILTVVLEVLDDSDSSVKELALSLIVEMLKNQKGAMENSVEIVIEKLLHVTKDIIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKSLVICINCLTKLVGQLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKAIDAAHD 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02278 1336 Gene3D - 686 910 IPR011989 -
Cca03g02278 1336 MobiDBLite consensus disorder prediction 491 508 - -
Cca03g02278 1336 Pfam HEAT repeat 49 76 IPR000357 GO:0005515
Cca03g02278 1336 MobiDBLite consensus disorder prediction 132 156 - -
Cca03g02278 1336 SMART TOG_3 171 403 IPR034085 -
Cca03g02278 1336 SMART TOG_3 670 919 IPR034085 -
Cca03g02278 1336 SMART TOG_3 1092 1328 IPR034085 -
Cca03g02278 1336 PANTHER CLASP 1 1328 - -
Cca03g02278 1336 MobiDBLite consensus disorder prediction 491 526 - -
Cca03g02278 1336 PANTHER PROTEIN, PUTATIVE-RELATED 1 1328 - -
Cca03g02278 1336 SUPERFAMILY ARM repeat 178 1326 IPR016024 -
Cca03g02278 1336 Pfam CLASP N terminal 692 886 IPR024395 -
Cca03g02278 1336 Pfam CLASP N terminal 173 389 IPR024395 -
Cca03g02278 1336 ProSiteProfiles HEAT repeat profile. 49 87 IPR021133 -
Cca03g02278 1336 Gene3D - 1119 1328 IPR011989 -
Cca03g02278 1336 Gene3D - 1 110 IPR011989 -
Cca03g02278 1336 Gene3D - 156 395 IPR011989 -
Cca03g02278 1336 MobiDBLite consensus disorder prediction 135 150 - -
Cca03g02278 1336 SUPERFAMILY ARM repeat 15 100 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02278 Cca-Chr3 43717259 43729613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02278 K16578 - gmx:100820523 2418.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02278 03 43717259 43729613 Cca03g02278 03 43717259 43729613 ECH
Cca03g02278 03 43717259 43729613 Cca02g00944 02 25473538 25495759 PCT