Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00944 ATGGAGGAAGCGCTCGAGCTCGCGCGCGCCAAGGACGCCAAGGAGAGGATGGCCGGCGTCGAGCGCCTCCACGAGGTGCTGGAAGCTTCCAGAAGGAGCCTCGGCGCCGCCGAGGTCACTGCGCTCGTCGATTGCTGCCTGGATCTCTTGAAGGACAGCAGCTTCAAGGTCTCGCAGGGCGCGCTCCAGGCGCTCGACTCCGCCGCCGTTCGCGCCGGCGACCACTTCAAGCTCCACTTCAACGCGCTCGTTCCCGCCGTCGTCGAACGCCTAGGTGACGCCAAGCAGCCAGTCCGCGACGCCGCCAGGAGGCTTCTGCTCACTCTCATGGAGGTTTCATCACCTACAATAATTGTTGAAAGAGCAGGGTCGTATGCTTGGACATGCAAAAGCTGGAGAGTCAGAGAGGAATTTGCACGAACTGTCACATCTGCAATTGGTCTATTTTCATCTACTGAACTTCCCCTTCAACGTGCTATTCTTCCTCCTATTTTGCAGTTGCTGAATGATCTGAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAGATGTATACACAAGCTGGATCCCAATTTCGTGATGAACTTCAGCGCCACAATCTTCCTTCATCTTTGGTGAAAGCTATTAATGCCAGGCTAGAGGGAATTCAACCAAAAGTTCACTCCTCAGATGGTATTTCTAGTGGTTATATTGCTGGGGAAATTAAGCCTGTGGGTGTTAATCCCAAAAAAAGTAGTCCAAAGGCTAAAAGTTCATCAAGGGAATCCTCCCTTTTTGGAGGAGAAGGTGATGTCTCAGAGAAAGTCTTAGACCCCATCAAGGTGTATTCAGAGAAGGAGTTAATCAGAGAAATTGATAAGATTGCTTCTACCCTTGTACCAGAAAAGGACTGGTCAATTCGTATTGCTGCCATGCAAAGAATTGAAGCTCTTGTTTTGGGAGGTGCCGCTGATTATCCATGTTTCTTTGGACTCCTGAAGCAGCTTGTTGCACCTTTAAGCACACAATTGTCAGATCGAAGGTCTAGCATTGTGAAGCAGGCTTGCCATCTATTATGTTTTTTGTCAAAGGACCTCTTGGGTGATTTTGAAGCATGTGCTGAATTGCTCATACCAGTCCTTTTGAAGCTGGTTGTGATTACTGTGCTTGTAATTGCGGAATCTGCAGATAACTGCATAAAAACGATGTTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCTCGGATAGCTGATTGTGCCAAAAATGATCGTAGTGCAGTACTTCGTGCAAGGTGTTGTGATTATGCTCTTTTGATACTAGAACATTGGCCTGATGCAGCAGAATTACAGCGATCAGCTGATTTATATGAGGATATGATAAGGTGTTGTGTTTCAGATGCAATGAGTGAGGTGCGGTCTACTGCAAGGATGTGTTACAGAATGTTTTCAAAGACTTGGCCAGAACGTTCCCGTCACCTGTTTTCATCCTTTGACCCTGCTATTCAAAGGTTAATAAATGAAGAGGATGGAGGACTGCATAGGCGACATGCATCACCTTCTGTTCGTGACAGAGGTGCAATGATGTCAATAACTAGTCAAGCTTCAGCTCCCTCTAATCTAACTGGTTATGGAACTTCTGCTATTGTTGCAATGGACCGAAGTTCAAGTTTATCATCAGGGGCTTCTATCACTTCTGGCGTTCTTCTTTCACAAGCCAAATCACTTGGTACAGGTACTGAACGTAGTTTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCACAGCTATTGAAAGCATGCTTAGGGGTTTGGATTTGTCTGATAGGCATGGTTCATCTACTCTCCGGTCATCGAGTTTGGATCTAGGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCTGCTGTCACAGCATCTAATCATCTGACTAGCGCTTTAAAGACAGAACCAACTGCTTCTGGTGCCAATAAAGGTAGTAACCGAAATGGTGGTTTGGGTTTGTCTGACATAATCACCCAAATTCAAGCTTCCAAAGATTCTGGCAGGTTATCGTATAATACTAATGTTGGTATTGAGCCATTATCAGAATTTTCATCATACTCAAGTAAAAGAGCTGCTGAAAAACTACAAGAAAGAAGTTCTGTTGATGAAAACAGTGACATCAGGGAGACTAGACGATATATGAACCCCAACATAGATAGGCAGTTTATGGATACCCATTATAGAGATGGCAACTTTAGGGATTCACAGAATAGTTATGTGCCTAATTTTCAGAGGCCACTATTGAGAAAGAATGTAGCTGCACGTGTGTCTGCTGGGTCCAGGAGGAGTTTTGATGATAACCAATTATCTCTTGGAGAGATGTCAAATTATGCAGATGGACCGGCATCTCTCCATGAAGCTCTGAGTGAAGGACTTAGCTCGGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTCCACTCTTTGTTGCAGCAAGGGCAGAAGGGAGTTCAAGAAGTAGTCCAGAATTTTGAGAAGGTAATGAAGTTATTTTTTCAGCACTTGGATGATCCCCATCATAAAGTTGCACAGGCCGCTCTCTCCACACTTGCAGAGATTATTCTGGCATGCCGAAAGCCCTTTGAGGGTTACATGGAACGAATGTTGCCCCATGTGTTTTCTCGGTTAATCGACCCCAAGGAACTAGTTAGGAAAGCATGCTCAATGAATTTGGAAGTTGTTAGCAAAACATACAGCATAGATTCTCTCTTGCCTGCATTGCTTCGATCACTAGATGAGCAAAGGTCACCAAAGGCAAAATTGGCTGTTATTGAGTTTGCAATAAGTTCCTTTAACAAGCATGCAATGAATACAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCCAAGTTAGTCCCATTGGTTCACGATAAAAATACAAAACTTAAAGAAGCAGCCATTACATGCATTATATCAGTGTACTCCCACTTTGATTCATCTGCAGTTTTGAATTTTATTCTTAGTTTGTCAGTTGATGAACAAAATTCTCTGAGACGAGCCCTTAAACAGCGCACCCCTCGCATTGAAGTAGACTTAATGAATTATCTGCAGAATAAGAAAGAGAGACGTTCTAAGTCTTCCTATGATCCATCTGATGTTGTGGGAGCATCCTCTGAAGAGGGATATGCTGGTTTGTCCAGGAAAGCTCATTACATCGGAAGGTATTCTGCTGGTTCACTGGATAGTGATGGTGGCAGGAAGTGGAGTTCCCAAGATTCCACCCTGATTAAAGCCAGTCTTGGCCAAGCAGCTTCTGATGAAACTGACGAACATACTGATTCTAATAATGGTAGTGTTGGTTTAAAAACTAAAGATCTTGCATACTCGGTCAATTCAATGGGTCAAAACTTTGGCTTTCAAATTAGCCAAGGAGGACATGTGGACAGCAGCATGAATTTTGAAGGTCTATCATCTGACCTGGATATTAATGGTCTGATGTCATCAGAACATTTAAATATTGCTGAGGACTTTAGACATGACAAAGAAGTTCCTTCTGAATTGAACCATAATCATCAGTCAACAGAAGATGTGAAGATAAACTACATGACAGACACTGGACCCAGCATTCCTCAGATTCTTCATATGATATGCAGTGGGGGTGATGGAAGCCCTATTTCAAGCAAGCGGACTGCACTTCAACAGCTAGTTGAAGTGTCTAAAGCTAATGATCATTCTGTTTGGATCCTGTACTTCAACCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAATCAGAGAGCTTGCCCTTTCTTTGATAGTTGAAATGCTTAAAAACCAGAAAGATGCCATGGAAAATTCAGTTGAGATTGTAGTTGAAAAGCTGCTTAATGTTACGAAGGATATTGTTCCAAAGGTCTCTAACGAAGCAGAGCACTGCCTCACCATTGTTTTATCTCAGAATGATCCATTCAGATGTTTAAGTGTTATTGTCCCTCTACTGGTTACTGAGGATGAGAAAACTCTTGTCACTTGCATAAATTGCTTGACAAAGCTTGTGGGGCTTCTCTCTCAGGAGGAACTGATGGCTCAGTTACCCTCTTTTCTGCCTGCTTTGTTTGAAGCTTTTGGAAACCAGAGTGCTGATGTTCGCAAGACCGTTGTTTTCTGTCTTGTGGATATTTATATCATGCTTGGGAAAGCATTTTTGCCATATTTACAAGGGCTTAACAGCACACAGTTGAAGTTGGTCACCATTTATGCGAATCGAATCTCACAGAAAATTTAG 4287 0.4378 MEEALELARAKDAKERMAGVERLHEVLEASRRSLGAAEVTALVDCCLDLLKDSSFKVSQGALQALDSAAVRAGDHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTCKSWRVREEFARTVTSAIGLFSSTELPLQRAILPPILQLLNDLNPAVREAAILCIEEMYTQAGSQFRDELQRHNLPSSLVKAINARLEGIQPKVHSSDGISSGYIAGEIKPVGVNPKKSSPKAKSSSRESSLFGGEGDVSEKVLDPIKVYSEKELIREIDKIASTLVPEKDWSIRIAAMQRIEALVLGGAADYPCFFGLLKQLVAPLSTQLSDRRSSIVKQACHLLCFLSKDLLGDFEACAELLIPVLLKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRSAVLRARCCDYALLILEHWPDAAELQRSADLYEDMIRCCVSDAMSEVRSTARMCYRMFSKTWPERSRHLFSSFDPAIQRLINEEDGGLHRRHASPSVRDRGAMMSITSQASAPSNLTGYGTSAIVAMDRSSSLSSGASITSGVLLSQAKSLGTGTERSLESVLHASKQKVTAIESMLRGLDLSDRHGSSTLRSSSLDLGVDPPSSRDPPFPAAVTASNHLTSALKTEPTASGANKGSNRNGGLGLSDIITQIQASKDSGRLSYNTNVGIEPLSEFSSYSSKRAAEKLQERSSVDENSDIRETRRYMNPNIDRQFMDTHYRDGNFRDSQNSYVPNFQRPLLRKNVAARVSAGSRRSFDDNQLSLGEMSNYADGPASLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGQKGVQEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLAEIILACRKPFEGYMERMLPHVFSRLIDPKELVRKACSMNLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHAMNTEGAANIGILKLWLAKLVPLVHDKNTKLKEAAITCIISVYSHFDSSAVLNFILSLSVDEQNSLRRALKQRTPRIEVDLMNYLQNKKERRSKSSYDPSDVVGASSEEGYAGLSRKAHYIGRYSAGSLDSDGGRKWSSQDSTLIKASLGQAASDETDEHTDSNNGSVGLKTKDLAYSVNSMGQNFGFQISQGGHVDSSMNFEGLSSDLDINGLMSSEHLNIAEDFRHDKEVPSELNHNHQSTEDVKINYMTDTGPSIPQILHMICSGGDGSPISSKRTALQQLVEVSKANDHSVWILYFNQILTVVLEVLDDSDSSIRELALSLIVEMLKNQKDAMENSVEIVVEKLLNVTKDIVPKVSNEAEHCLTIVLSQNDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGLLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQKI 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00944 1428 PANTHER PROTEIN, PUTATIVE-RELATED 28 1426 - -
Cca02g00944 1428 Gene3D - 267 506 IPR011989 -
Cca02g00944 1428 Pfam CLASP N terminal 285 500 IPR024395 -
Cca02g00944 1428 Pfam CLASP N terminal 803 997 IPR024395 -
Cca02g00944 1428 MobiDBLite consensus disorder prediction 243 265 - -
Cca02g00944 1428 Gene3D - 797 1021 IPR011989 -
Cca02g00944 1428 SMART TOG_3 1182 1428 IPR034085 -
Cca02g00944 1428 SMART TOG_3 3 224 IPR034085 -
Cca02g00944 1428 SMART TOG_3 282 514 IPR034085 -
Cca02g00944 1428 SMART TOG_3 781 1029 IPR034085 -
Cca02g00944 1428 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Cca02g00944 1428 MobiDBLite consensus disorder prediction 247 261 - -
Cca02g00944 1428 MobiDBLite consensus disorder prediction 605 619 - -
Cca02g00944 1428 PANTHER CLASP 28 1426 - -
Cca02g00944 1428 Gene3D - 1221 1427 IPR011989 -
Cca02g00944 1428 Gene3D - 1 223 IPR011989 -
Cca02g00944 1428 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Cca02g00944 1428 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Cca02g00944 1428 Coils Coil 1274 1294 - -
Cca02g00944 1428 SUPERFAMILY ARM repeat 288 1421 IPR016024 -
Cca02g00944 1428 Coils Coil 10 30 - -
Cca02g00944 1428 MobiDBLite consensus disorder prediction 602 633 - -
Cca02g00944 1428 SUPERFAMILY ARM repeat 2 402 IPR016024 -
Cca02g00944 1428 MobiDBLite consensus disorder prediction 1096 1117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00944 Cca-Chr2 25473538 25495759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00944 K16578 - gmx:100801377 2543.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00944 02 25473538 25495759 Cca02g00944 02 25473538 25495759 ECH
Cca03g02278 03 43717259 43729613 Cca02g00944 02 25473538 25495759 PCT