Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02270 ATGTCCCGTGACTGTGAAAACACCGTTATTGTGGGGTGTGGGGCAGTGTCTGTGGATTTCTTGGCTACTGTTGCTGCTTTTCCCAACCCAGATGACAAAATCAGAAGCACTTCCTTCAAGGTGCAAGGAGGTGGCAATGCAGGCAATGCCTTAACTTGTGCCTCTCGCTTAGGCCTCAAACCAAGACTCATCTCCAAGGTTGCAGATGACACTCAAGGCAGGGATATATTACACGAGCTGCAGGTTGATGGTGTGGACACATCCTTTATGGCCGTCTCTCAGGATGGTACTTCACCATTTACGTATATCATTGTGGACAGCCAAACTAAGTCCCGTACTTGTATACATACGCCAGGATTTCCTCCCATGAAGCCAGATGATCTTCCGGAGTCAAGTTTGCTAACTGCATTGAATGGATCAAGACTTGTTTATTTTGATGGGAGATTGCATGAAACTGCTCTAGTTGTTGCACAAGAGGCAGTTAAGAAGAACATACCTATCCTAATGGATGCAGAGAGGTTGAGAGAAGGGTTGGATGATCTCGTGAAATTAGCTGATTATGTCGTGTGTGCCTCACGGTTTCCACAGGCATGTGCTTTGTTTTCTCTGGAAGCATGGACAGGGGCATCAACAGTTCCTAAAGCACTTGTTTGTATGCTTTTAAGGTTGCCCAACATCAAATTTGTGATTGTAACTTTGGGAAAAGATGGTTGCATAATGCTCGAGAGAAGTGCTAATGAGGGAGTTTCCACCGAAGAAATGGATGTTGACAAATTACTGGAATCTCTGGAGATGAGAAAAAACAGGAGCATACACATCCCAACCTGCATATCTTCATCAGTGACAAAATTGCATGCAGAAGGTATAGGAACAGTTTGTGGCAGGTTATACATTGGAACAGCTGAGAACATACCACCATCAGAGCTTATTGATACCACAGGTGCTGGAGATGCATTTATTGGAGCTATTCTCTATGCTATCTGTGCCAACTTCGCGAGAGAGAAAATGCTGTGTTTTGCTGCAACTGTGGCAGCTTCCAAGTGCAGAGCTCTAGGAGCAAGAAGTGGCACGGTACACGTTCATGGTGTGAAGTCAAACAAACAGAACTCGTCTCAGCTTGGATCAGTGAGTCACCAAACCGAACTCGAACGGAACCGTCGCGATGGCGTGCATGTCGAAGCCGTTCGCCGCAGCCAACTACGGCAGCCTCctcaatctcaatctcaacctcaaccaacctcGCCGCGTCCATTTCCGTTTCGCCGCCAAAATCAAAATGTTGGATACGGAATGACAACGGTAGATTTTCTGGCCACCGTGGACGGATATCCTCAACCCGACGACAAGCCGAAGCTCATCTCCAAGGTTGGGGATGACGCGCACGGATTCGCCATATTGAAGGAGTTAGAAGCCGATGGCGTCGATACATCCTTTATCGTCGTATCCAAGGGCGGTAGTTCAACGTTTTCGTATGTAATAGTTGACAACCAAACGAAAACTCGCACAAGTATCTATACCCCTGGAGAACCTCCGCTGATGCCGGCTGACCTGTCCCAGTCAACATTATTATCTGCATTTGATGGAGCAAGATTAGTCTATTTCGATGGGATGTTTCCTGAAACTGCTCTATTTGTTGCACAAGAGGCAGCTCGCAATAATATTCCTATTTTAGTTGAAGCAGAATCACCAAGGGAAGGGTTGGATGAACTCCTGAAGCTAGCTGATTTTGTTGTATGCTCTGCAAGGTTTCCACAGGCTTGGACGCAAGCACCATCTATCCCGAGTGCACTGGTTTCCATGCTTTTAAGATTGCCAAATATCAACTTTGTGATTGTGACTTTGGGTGAAGATGGTTGTCTAATGTTAGAAAGAAGTGCAAACGAGGATGCTGACTTAGAAGAAAGGCATGTAGAGAGTTTCTTAGAATTCTTATATAAAGGGAAAGATGATAGCTTGGCTATCCCTACCTGTATACCATCGGCGGTGATGAAATTCAAAGCAAATGGAATAGGGACAATTTGTGGGAGATTCTATATTGGAACAGCAGAGAAGATACCAGATTCTGAGCTGATTGATACAACTGGTGCTGGGGATGCCTTTATTGGAGCCATTTTGTATGCTATCTGCGCAAACATGGCACCAGAGACTATGTTGCCACTTGCTGCTCAAGTGGCAGCTGCCAAGTGTAGAGCTTTGGGAGCCCGATCTGGTCTTCCACGTCGGACAGATCCACGCTTGGCATCTTTTTTATGCTAA 2256 0.4535 MSRDCENTVIVGCGAVSVDFLATVAAFPNPDDKIRSTSFKVQGGGNAGNALTCASRLGLKPRLISKVADDTQGRDILHELQVDGVDTSFMAVSQDGTSPFTYIIVDSQTKSRTCIHTPGFPPMKPDDLPESSLLTALNGSRLVYFDGRLHETALVVAQEAVKKNIPILMDAERLREGLDDLVKLADYVVCASRFPQACALFSLEAWTGASTVPKALVCMLLRLPNIKFVIVTLGKDGCIMLERSANEGVSTEEMDVDKLLESLEMRKNRSIHIPTCISSSVTKLHAEGIGTVCGRLYIGTAENIPPSELIDTTGAGDAFIGAILYAICANFAREKMLCFAATVAASKCRALGARSGTVHVHGVKSNKQNSSQLGSVSHQTELERNRRDGVHVEAVRRSQLRQPPQSQSQPQPTSPRPFPFRRQNQNVGYGMTTVDFLATVDGYPQPDDKPKLISKVGDDAHGFAILKELEADGVDTSFIVVSKGGSSTFSYVIVDNQTKTRTSIYTPGEPPLMPADLSQSTLLSAFDGARLVYFDGMFPETALFVAQEAARNNIPILVEAESPREGLDELLKLADFVVCSARFPQAWTQAPSIPSALVSMLLRLPNINFVIVTLGEDGCLMLERSANEDADLEERHVESFLEFLYKGKDDSLAIPTCIPSAVMKFKANGIGTICGRFYIGTAEKIPDSELIDTTGAGDAFIGAILYAICANMAPETMLPLAAQVAAAKCRALGARSGLPRRTDPRLASFLC 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02270 751 MobiDBLite consensus disorder prediction 380 395 - -
Cca03g02270 751 Gene3D - 427 736 IPR029056 -
Cca03g02270 751 Gene3D - 9 355 IPR029056 -
Cca03g02270 751 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 6 359 - -
Cca03g02270 751 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 6 359 - -
Cca03g02270 751 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 419 449 - -
Cca03g02270 751 SUPERFAMILY Ribokinase-like 10 359 IPR029056 -
Cca03g02270 751 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 449 750 - -
Cca03g02270 751 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 419 449 - -
Cca03g02270 751 MobiDBLite consensus disorder prediction 364 379 - -
Cca03g02270 751 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 449 750 - -
Cca03g02270 751 PRINTS Ribokinase signature 229 240 IPR002139 GO:0016301
Cca03g02270 751 PRINTS Ribokinase signature 12 33 IPR002139 GO:0016301
Cca03g02270 751 PRINTS Ribokinase signature 39 58 IPR002139 GO:0016301
Cca03g02270 751 CDD ribokinase_group_B 9 356 - -
Cca03g02270 751 MobiDBLite consensus disorder prediction 364 424 - -
Cca03g02270 751 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 311 324 IPR002173 GO:0016773
Cca03g02270 751 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 692 705 IPR002173 GO:0016773
Cca03g02270 751 Pfam pfkB family carbohydrate kinase 12 249 IPR011611 -
Cca03g02270 751 Pfam pfkB family carbohydrate kinase 302 355 IPR011611 -
Cca03g02270 751 Pfam pfkB family carbohydrate kinase 683 739 IPR011611 -
Cca03g02270 751 Pfam pfkB family carbohydrate kinase 451 625 IPR011611 -
Cca03g02270 751 SUPERFAMILY Ribokinase-like 429 743 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02270 Cca-Chr3 43575059 43591753 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02270 - - ccaj:109795876 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02270 03 43575059 43591753 Cca03g02270 03 43575059 43591753 ECH
Cca03g02270 03 43575059 43591753 Cca02g00955 02 25683138 25693102 PCT