Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00955 atgtatgtatgtatatatgtatatatggatggatggatggatggatgtatgCAGGTGGGGTGTGGAGGGGTATCCATTGATTTTTTGGCCACCGTTGCTGCTTACCCTAAGCCAGATGACAAAATCAGAAGCACAAGCTTGAAGGTTCAAGGAGGTGGCAATGCCGGTAATGCCTTAACCTGCCTTGCTCGCTTGGGCTTAAACACCAGGCTCATTTCCAAGGTTGCTGATGACAGTCAAGGCAGGGGTATATTAGACGAGCTACAAGCTGATGGTGTAGATACATCCTTTATGGTGGTGTCCAAGGAGGGAACTTCACCATTTACGTATATTATTGTGGACAACCAAACGAAGACTCGTACTTGTATACATACCCCAGGATATCCTCCAATGATACCAGATGACCTGCCAAAATCAAGTTTGTTATCTGCATTGGATGGAGCAAAAATTGCATATTTTGATGGGAGGTTGCCTGATACTGCTCTAGTTGTTGCCAATGAGGCTGTTAGAAAGAATATACCCATATTAATTGATGCAGAAAGGCCGAGGGAAGGGTTGGATGATCTCCTAAAATTAGCTGATTATGTTGTATGCTCAGCAAAGTTTCCAAAAGCTTGGACAGGGGCATCAACTGTTCCACAAGCACTTGTTTCTATGCTTTTAATGTTGCCTAACATAAAATTCGTGATTGTAACTTTGGGGAAAGATGGTTGTATAATGCTGGAGAGAAGTCTTGATGCAGGTCCTTCCACTGAAGAAGTGGATATAGACAACTTCTTGGAATCACTGGCGTTAAAAAGGAACAAGACTGTACCCATTCCAACCTGCATATCATCATCAGTGGCAAAATTGAAGGCAGAAGGGATAGGAGAGGTTAGTGGGAAGTTATACGTTGGAACAGCCGAGAGTATTCCACCATCAGAGCTCATTGATACAACTGGTGCTGGGGATGCATTTATTGGAGCTGTTATCTATGCTATCTGTGCCAAGTTTACACCAGAGACAATGCTATCCTTCGCTGCTAACGTGGCAGGTGCCAAGTGCAGGGATCTTGGAGCACGAAGTGGTCTTCCTTACCGTGCAGACCCACGCTTAGGATCATTTATATTGGAGAAGATAAGTAGTTCAGCTTAA 1134 0.4224 MYVCIYVYMDGWMDGCMQVGCGGVSIDFLATVAAYPKPDDKIRSTSLKVQGGGNAGNALTCLARLGLNTRLISKVADDSQGRGILDELQADGVDTSFMVVSKEGTSPFTYIIVDNQTKTRTCIHTPGYPPMIPDDLPKSSLLSALDGAKIAYFDGRLPDTALVVANEAVRKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTGASTVPQALVSMLLMLPNIKFVIVTLGKDGCIMLERSLDAGPSTEEVDIDNFLESLALKRNKTVPIPTCISSSVAKLKAEGIGEVSGKLYVGTAESIPPSELIDTTGAGDAFIGAVIYAICAKFTPETMLSFAANVAGAKCRDLGARSGLPYRADPRLGSFILEKISSSA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00955 377 CDD ribokinase_group_B 20 359 - -
Cca02g00955 377 Pfam pfkB family carbohydrate kinase 301 358 IPR011611 -
Cca02g00955 377 Pfam pfkB family carbohydrate kinase 23 242 IPR011611 -
Cca02g00955 377 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 14 371 - -
Cca02g00955 377 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 311 324 IPR002173 GO:0016773
Cca02g00955 377 Gene3D - 19 355 IPR029056 -
Cca02g00955 377 PRINTS Ribokinase signature 47 66 IPR002139 GO:0016301
Cca02g00955 377 PRINTS Ribokinase signature 229 240 IPR002139 GO:0016301
Cca02g00955 377 PRINTS Ribokinase signature 20 41 IPR002139 GO:0016301
Cca02g00955 377 SUPERFAMILY Ribokinase-like 19 362 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00955 Cca-Chr2 25683138 25693102 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00955 - - gmx:100802550 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02270 03 43575059 43591753 Cca02g00955 02 25683138 25693102 PCT