Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02246 ATGGGTAGGTCGAGAAGAAGAGAGCAAGAGCAAACACAAACGCTCCTCCTTCTGATTACACCACTCCTTCTACTACCCACACCCACCTCAGGCGCAGACAACACAAACCTCATCTACAAAGGCTGCGCCGACCAGAAGCTGCAAGACCCATCAAGCTTGAAACCCCTTTTGGCCTCTCTTGTGTCCGAGTCAGCGCAAAAGCCCTTCGCCACCGCCACCCAGAACGCCCTCACCGCCGCCTACCAATGCCGCGGCGACCTCTCCAACGCCGACTGCTCCGCCTGCGTCGCCAGGATCCCCGCCATGCTCCCCTCCCTCTGCGGCGCCGACGTCGCCGCCGCCCGCGTCCAGCTCGGCGGCTGCTACCTCCGCTACGAGGCCGTGGGCTTCAAGCAGGTCCCCGCCACGCAGCTGCTCTACAAAGTGTGCGGGTCCCGGCGGCTCTCCGACGGCGCGGGCTTGGAGGCGCGGAGGGAGGCGGCGTTCGAGATGGCGGAGAACGGCGTGCAGAGCAGCGGCGCGTTGTTCTACACGGGAAGTTACGAGAGTTTGTACGTGTTGGCCCAGTGCGAGGGTGATTTGGGAAATGCGGATTGCGGGGATTGTATCAGGAGTGCTGCGGACCAGGCTAAGGCTCAGTGCGGTCGCGCTATTTCCGCGCAGACTTATCTCCACGCTTGTTATGTTAGTTATAGCTTCTACCCTAATGGAGTTCCCACTGCCGCATCGTCTTCGCCGAGAGCAGGGGAAGGGGGGCATGAGCACACGGAGAGGACGGTGGCGCTTGCGGTGGGAGGCGTGGCGGCGTTGGGGTTCTTGATTGCTTGTATGTTATTTGTGAAGTCGGCGTTGAAGAAAAGAGGTGAAGTGAATATACCTTTGTCTTTGTATAGTTGTGGTGAGAGGAAAGGGGAAAGGGGAAAGGATAAATTAAGTGAGGTGTGA 945 0.5947 MGRSRRREQEQTQTLLLLITPLLLLPTPTSGADNTNLIYKGCADQKLQDPSSLKPLLASLVSESAQKPFATATQNALTAAYQCRGDLSNADCSACVARIPAMLPSLCGADVAAARVQLGGCYLRYEAVGFKQVPATQLLYKVCGSRRLSDGAGLEARREAAFEMAENGVQSSGALFYTGSYESLYVLAQCEGDLGNADCGDCIRSAADQAKAQCGRAISAQTYLHACYVSYSFYPNGVPTAASSSPRAGEGGHEHTERTVALAVGGVAALGFLIACMLFVKSALKKRGEVNIPLSLYSCGERKGERGKDKLSEV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02246 314 Gene3D - 33 130 IPR038408 -
Cca03g02246 314 Gene3D - 135 235 IPR038408 -
Cca03g02246 314 ProSiteProfiles Gnk2-homologous domain profile. 136 236 IPR002902 -
Cca03g02246 314 Pfam Salt stress response/antifungal 52 126 IPR002902 -
Cca03g02246 314 Pfam Salt stress response/antifungal 176 233 IPR002902 -
Cca03g02246 314 ProSiteProfiles Gnk2-homologous domain profile. 31 130 IPR002902 -
Cca03g02246 314 ProSitePatterns Heavy-metal-associated domain. 87 116 IPR017969 GO:0046872
Cca03g02246 314 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 10 288 - -
Cca03g02246 314 PANTHER PLASMODESMATA-LOCATED PROTEIN 1 10 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02246 Cca-Chr3 43304554 43305662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02246 16 237 Receptor kinase-like Gene Family AT5G40380 28.980 2.53e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02246 - - gmx:100810212 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02246 03 43304554 43305662 Cca03g02246 03 43304554 43305662 ECH
Cca03g02246 03 43304554 43305662 Cca02g00976 02 25967018 25968473 PCT