Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00976 ATGGGCATGATGAGAAAACGTTACtctcattctcacccttttccttttccttttctcttcactgttttctgcttcctCCTTCTTCATCCCATGACAGATGCAGATAACACAAACTTCGTTTACAAGGGTTGTGCAGTTCAGAAGCTGCACGACTCATCATCACAGAACCTCAAAACCCTCTTGGTTTCTCTGGTGGCACAGGCTGAACAAAAGGCCTTCTTCACCACAACCTCAGGGGAAGGCCAGAACGTGATCATGGGTCTCTACCAATGCAGAGGGGACCTCTCAAACACTGCATGCTACGACTGCGTGAGCAAGATTTCCGACATGCTTGAAAACTTGTGTGGCAAGGTGGTGGCTGCGAGAGTTCAGCTTATCGGGTGCTACCTGAGGTACGAGGTTGTCGGGTTCAAGCAGGTTCCTGAAACTCAATTGCTTTACAAGGTTTGTGGCTCCAAGATGGAGGGTTACGATGATGGATTTGAGGAGAGGAGGGACTCTGCGTTTGGTATGGTGGAAAGTGGTGTGAAGAATGGTGGGAAATTGTTTTACACTGGAAGCTATCAGTCTCTCTATGTGTTGGGGCAGTGTGAGGGTGATTTGGCCAAAGATGATTGTGGGGATTGTGTGAAGAGTGCTGAGGATCAAGCCAAAGCTGAATGTGGTGACTCAGTTTCTGCACAGGTTTATCTGCACAAGTGTTTTATCAGCTACAGTTTTTACCCCAAGGGAGGGTCCAAGTCCAACATGTCATCTTTTCCAGGGTCACTGGGGAACCAGGACACGCTGAGGACTATTGCTCTTGCAGTGGGAGCGTTTGCAGCTTTGGGTTTCTTAATTGCTTGTTTGTTATTTCTCAAGTCAGTGTTGAAGAAAAAAGATGATAAGTATTGA 894 0.4452 MGMMRKRYSHSHPFPFPFLFTVFCFLLLHPMTDADNTNFVYKGCAVQKLHDSSSQNLKTLLVSLVAQAEQKAFFTTTSGEGQNVIMGLYQCRGDLSNTACYDCVSKISDMLENLCGKVVAARVQLIGCYLRYEVVGFKQVPETQLLYKVCGSKMEGYDDGFEERRDSAFGMVESGVKNGGKLFYTGSYQSLYVLGQCEGDLAKDDCGDCVKSAEDQAKAECGDSVSAQVYLHKCFISYSFYPKGGSKSNMSSFPGSLGNQDTLRTIALAVGAFAALGFLIACLLFLKSVLKKKDDKY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00976 297 ProSiteProfiles Gnk2-homologous domain profile. 35 137 IPR002902 -
Cca02g00976 297 Pfam Salt stress response/antifungal 181 240 IPR002902 -
Cca02g00976 297 Pfam Salt stress response/antifungal 54 133 IPR002902 -
Cca02g00976 297 Gene3D - 36 137 IPR038408 -
Cca02g00976 297 Gene3D - 142 242 IPR038408 -
Cca02g00976 297 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 17 294 - -
Cca02g00976 297 ProSiteProfiles Gnk2-homologous domain profile. 143 243 IPR002902 -
Cca02g00976 297 PANTHER PLASMODESMATA-LOCATED PROTEIN 1 17 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00976 Cca-Chr2 25967018 25968473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00976 19 242 Receptor kinase-like Gene Family AT4G05200 25.630 1.92e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00976 - - gmx:100795002 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00976 02 25967018 25968473 Cca02g00976 02 25967018 25968473 ECH
Cca03g02246 03 43304554 43305662 Cca02g00976 02 25967018 25968473 PCT