Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02238 ATGATTCCAGTAGAATCAAGAATCATGTCAGTGGTAGAAGAAGATTACACCCAAGATGGCACGGTGGACCTCAAAGGGAGACCCATTTTAAGATCAAATACTGGAAGATGGAAAGCTTGTTCCTTCATTGTAGGGTATGAAATGATTGAAAGGATGGCATACTATGGGATAGCCTCAAACCTAGTGTTGTATCTAACAAAGAAGCTCCATGAGGGCACTGTGAAATCTTCAAACCACGTTACCAACTGGGTGGGTACAGTATGGATGATGCCAGCTGCTGGGGCATATATAGCCGATGCCTATCTTGGCCGATATTGGACCTTCGTTATAGCATCTGCCATTTACCTTCTGGGAATGTGTTTGTTGACTCTAGCAGTGTCACTACCAGCACTGAGACCACCACCGTGTGCCTCAGGCATAGCAGACAAGGATTGTCAACATGCATCATCATTTCAAGTGGGAATTTTCTTCTTTGCCTTGTACATCATTGCAGCAGGCACAGGCGGAACCAAGCCCAACATTTCTACAATGGGAGCAGACCAATTTGACGAGTTTGAGCCCAAAGAGAGGACCCAAAAGCTTTCCTTCTACAACTGGTGGGTGTTTAACATTCTAATTGGAACCATTTCTGCCCAAACCCTCTTGGTATACATACAAGACAGAGTTGGTTTTGGCCTTGGTTATGGGATCCCAACCATTGGACTAGCCCTTTCAATTTTGGTGTTTCTGTTTGGAACTCCACTTTATAGGCATAGATTGCCCTCAGGAAGCCCTTTAACCAGGATGGTTCAGGTCTTAGTGGCTGCTATGAGGAAGTGGAAGGTTAAGATCCCAGATAATCTAAATGAGCTAAATGAACTCAGCATGGAAGAGTATTATGCAAGCATAGGGAGAAGCAGAATTTGTCACAGCTCTTCTTTAAGCTTCCTTGACAAAGCAGCAGTAAAGACAGGCCAAACATCACCATGGATGCTTTGTACTGTGACTCAAGTTGAGGAAACCAAGCAAATGATGAAAATGATTCCTATTTTGATCACTACATGCATTCCAAGCACCACAATAGCTCAAACCAGCACACTTTTCATCAGACAAGGCACCACACTAGACAGGAGCATGGGACCCCATTTTGAAATCCCTCCGGCATGTCTCATAGCATTTGTAAACATCTTCATGCTCATAAGCGTTGTCATCTACGATCGCCTTTTTGTTCCTACAATCCGGCGCTACACAAACAACCCCAGAGGGATCTCATTGCTGCAAAGACTAGGAATTGGCCTTTCTCTACATGTTATCATAATGCTCACTGCATGCTTAGTTGAGAGGAAGAGACTCAGTGTTGCAAGGGAAAACAACCTTTTAGACCAGAATGACACAATTCCTCTAACTATTTTCATCCTCATTCCACAGTTTGCTTTGACAGGGATTGCTGATACCTTTGTTGATGTTGCCAAGTTGGAGTTCTTCTATGATCAAGCACCAGAAGCCATGAAAAGTTTGGGAACATCATATTTCACAACCACCTTGAGCATTGGAAGTTTTCTTAGTACTTTTCTTCTTTCAACTGTTGCTGATCTCACACGTAGACATGGTCATAAGGGTTGGATTTTGGATAATCTAAATGTCTCCCGTCTAGATTACTACTATGCATTCTTGGCCACACTTAGTGCTATCAACTTCCTTTGCTTTGTGGTTGTTGCCAAGTTATATGTCTATAATGATGATGTAACACAAACCAAAATGCACTTGGATATGAACCCTGCTTCATCTAAGGGCAATGCTGGAACATGCCAAAGTACCCCACAACCAGATGTCAAGTCCTAG 1821 0.4311 MIPVESRIMSVVEEDYTQDGTVDLKGRPILRSNTGRWKACSFIVGYEMIERMAYYGIASNLVLYLTKKLHEGTVKSSNHVTNWVGTVWMMPAAGAYIADAYLGRYWTFVIASAIYLLGMCLLTLAVSLPALRPPPCASGIADKDCQHASSFQVGIFFFALYIIAAGTGGTKPNISTMGADQFDEFEPKERTQKLSFYNWWVFNILIGTISAQTLLVYIQDRVGFGLGYGIPTIGLALSILVFLFGTPLYRHRLPSGSPLTRMVQVLVAAMRKWKVKIPDNLNELNELSMEEYYASIGRSRICHSSSLSFLDKAAVKTGQTSPWMLCTVTQVEETKQMMKMIPILITTCIPSTTIAQTSTLFIRQGTTLDRSMGPHFEIPPACLIAFVNIFMLISVVIYDRLFVPTIRRYTNNPRGISLLQRLGIGLSLHVIIMLTACLVERKRLSVARENNLLDQNDTIPLTIFILIPQFALTGIADTFVDVAKLEFFYDQAPEAMKSLGTSYFTTTLSIGSFLSTFLLSTVADLTRRHGHKGWILDNLNVSRLDYYYAFLATLSAINFLCFVVVAKLYVYNDDVTQTKMHLDMNPASSKGNAGTCQSTPQPDVKS 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02238 606 CDD MFS_NPF5 37 571 IPR044739 GO:0042937|GO:0042938|GO:0071916
Cca03g02238 606 Gene3D MFS general substrate transporter like domains 8 578 IPR036259 -
Cca03g02238 606 MobiDBLite consensus disorder prediction 586 606 - -
Cca03g02238 606 SUPERFAMILY MFS general substrate transporter 28 568 IPR036259 -
Cca03g02238 606 Pfam POT family 105 535 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca03g02238 606 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 587 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca03g02238 606 PANTHER PEPTIDE TRANSPORTER 19 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02238 Cca-Chr3 43221945 43226424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02238 12 578 Organic Solute Cotransporters AT5G46040 58.627 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02238 - K14638 gmx:100787001 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02238 03 43221945 43226424 Cca02g00062 02 994223 1004841 PCT