Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02220 ATGGCCAGAAAACTAGGACAATTACTGGCGCTACTTTTCTCTGTTTCGATCTGTGGAGCCGTTACGATTCCTGGCCCAGTCTCCGATGCTCACCGTTCCGCCGCGTCGGAGCTCTTCGATGGATCCTTTTCGAGTTTAGAAGATGCCTATGAGGCCCTGAGAGTTTTTGAGATTCTTGCCGTTGGGAATAAGCCCGATGTGAGTGCAGCCACTTGTCAGAAAGTAGTGGAAAATCTTGGGCCTTCATCCCTTGTGAAGGATTTGTTCTATGCGTTAAAGGTTAATAGCATATTAAAATGCAAGGTTAACGGAGGTGTTTTCAAGGATGTTGCTTCAAGACTTAAAGCCGCTGTCAATGATGCCAGTACTTTGGTTGACATGTACTATTCAATAGGAAGTTTGGTTCTTACAAAGGATCAGGCTTCTGATGTTGATGTGCTTCTTACTGATGCTGATGGGACCTTCCATTCAATCAAGGCTCTGAGCCAAAGTGATGGAAGATGGCGCTATAGTTCTGATAATCCAGAGTCTAGTACTTATGCTGCTGGATTAGCACTCGAAGCATTGGCTGGAGTGGTCTCATTAGCATCTTCTGAAATTGATCAGTCTAGGGTGAATACAGTGAAAAATGATATATTGAAGCTTTTTGATAGCATTGAGAAATATGATGATGGAACTTTCTATTTTGATGAGAAATTTGTTGGTGGACGTGAGCATCAGGGTTCTCTTTCCACAACTTCTTCTGTTGTTCGAGGGGTTACAGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGGGGATAAAATATTGGGTTTAGCAAAATTTTTCCTAGGCATTGGAATCCCAGGAGATGCCAAGGACTTCTTCAATCAAGTTGAATCATTGGCTCTTCTAGAGAACAACAGGATTTCCATCCCATTGGTACTGTCACTTCCTGCAACAGTTTATTCATTATCCAAAAAAGATCAGCTCAAGGTTAGGGTAACTACAGTATTCGGTTCAGCTGCACCACCTTTAACAGTTAATCTTGTCCGAGCTGTCCGCACTGATGCTAAAGATTCAGCTATTATTGAGAATAAGGAGCTCCAATATGATAAAAAAAATGGAATTCATGTCTTGGAAGTTTTCCCAGATAATGCGGATGTGGGAGCCTATGTGTTTGTTTTTGAGATTGTACTTGATGAACCTGCTGGTGAAAAAGTTTATGCTACTGGAGGCCAAATTCATGTACCAATATTTGTCACTGGCATTATTAAAGTCAGCAACGCAGAAATTGCAGTTGTTGACAGTGATCTTGGAAGTGTTGAAAACCAGAAAACGCTAGATTTGGCTGGAAATGATGTTGTTTCGTTCTCAGCTAACCACTTACAAAAGTTGCGCTTTTCTTTCCAATTGACAACACCTCATGGTCATACTTTCAAGCCTCACCAGGCATTTTTCAATTTGAGGCATGAGACAAAGCGTGAACACATCTTTGTGGTTGGAAATACTGGCAAGAAGTTTGAGATTATTCTTGATTTTCTTGGTTTGGTGGAGAAATTTTATTACCTTTCAGGCAGATATGACATTGAGCTGACAGTTGGTGATGCTGCCATGGAAAACTCTTTCTTAAGGCCACTAGGTCATGTTGATTTAGATCTTCCAGAAGCACCTGAGAAAGTGGCCCGTCTTCCTCCACTTCCTGTTGATCCTTACTCAAGATATGGGCCCAAAGCTGAGATAACCCACTTATTCAGGGCTCCTGAAAAGCGACCACCCCAGAAACTCTCTCTTACTTTCTTGAGTTTGACCCTCCTGCCATTTATTGGCTTTTTGGTTGGGGTGTTACGCCTGGGGGTGAACTTGAAGAATTTTCCTTCTTCAGCAGTACCTGCTACATATGCCATCCTATTCCATCTTGGCGTTGCTGCAGTTCTATTGCTTTATGTACTTTTCTGGTTGAAGCTGGACTTGTTCACTACACTCAAAACTCTAGGATTGTTGGGAGCTTTTCTGATGTTTGTGGGACACAGAATTCTTTCCCATCTCGCTTCAACATCATCCAAGTTGAAGTCTGCATGA 2067 0.4204 MARKLGQLLALLFSVSICGAVTIPGPVSDAHRSAASELFDGSFSSLEDAYEALRVFEILAVGNKPDVSAATCQKVVENLGPSSLVKDLFYALKVNSILKCKVNGGVFKDVASRLKAAVNDASTLVDMYYSIGSLVLTKDQASDVDVLLTDADGTFHSIKALSQSDGRWRYSSDNPESSTYAAGLALEALAGVVSLASSEIDQSRVNTVKNDILKLFDSIEKYDDGTFYFDEKFVGGREHQGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLAKFFLGIGIPGDAKDFFNQVESLALLENNRISIPLVLSLPATVYSLSKKDQLKVRVTTVFGSAAPPLTVNLVRAVRTDAKDSAIIENKELQYDKKNGIHVLEVFPDNADVGAYVFVFEIVLDEPAGEKVYATGGQIHVPIFVTGIIKVSNAEIAVVDSDLGSVENQKTLDLAGNDVVSFSANHLQKLRFSFQLTTPHGHTFKPHQAFFNLRHETKREHIFVVGNTGKKFEIILDFLGLVEKFYYLSGRYDIELTVGDAAMENSFLRPLGHVDLDLPEAPEKVARLPPLPVDPYSRYGPKAEITHLFRAPEKRPPQKLSLTFLSLTLLPFIGFLVGVLRLGVNLKNFPSSAVPATYAILFHLGVAAVLLLYVLFWLKLDLFTTLKTLGLLGAFLMFVGHRILSHLASTSSKLKSA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02220 688 PANTHER RIBOPHORIN II 1 688 IPR008814 GO:0006487|GO:0008250|GO:0016021
Cca03g02220 688 Pfam Oligosaccharyltransferase subunit Ribophorin II 9 680 IPR008814 GO:0006487|GO:0008250|GO:0016021
Cca03g02220 688 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 1 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02220 Cca-Chr3 42995135 43004360 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02220 K12667 - gmx:100780415 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02220 03 42995135 43004360 Cca03g02220 03 42995135 43004360 ECH
Cca03g02220 03 42995135 43004360 Cca02g01000 02 26377355 26384709 PCT