Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01000 ATGGCAACACACGTAGCAGCAGCAACAACATTTCTGCTGCTTCTTCTTCTCCCTTTCTCCACCTCCGTCTCTCATTCTCACCGATCCGCCGCCGTCCACCTCTTCGCTCCTGCCTCCGCAAGTTTAGAAGACGCGTACGAGGCGCTTAGAGTTTTTGAGATTCTTGGAATCGAAGAGAAGACTCATTCGAGCACCGCCACGTGTGAGAAAGTGTTGGAGAATCTAGGCTCGTCTTCCCCGCTCAAGGATTTGTTCTACGCCTTGAAAGTTAACAAAATATTAAAATGCAATGTTAACGGGGAGGGTTTCGAGGATATTGCTTCAAGACTTAAAGCCAATGTGCATGATGCAAGTATTTTGCTTGACATATACTACTCAATTGGAGGTTTGGTTCTTATGAAGGATCAGGATTCTAATGTTGATGTGCTTCTTGCTGATGTTGATGGGGTTTTTCAATCAATCAAGGCTCTCAGTCAAAGTGATGGAAGATGGCGGTATAGTTCTGATAATCCAGAGTCCAGTACCTATGCTGCTGGATTAGCACTTGAAGCTCTTGCTGGGGTAATCTCACTAGCATCTTCTGAAATTGATCAGTCTAAGGTCAATATAGTGAAAAATGACATAGTAAAGCTTTTTGATGGCATTGAGAAATATGACGATGAAACCTTTTATTTTGATGAGAAATTTGTTGGTGGAAATGAGCAACGTGGTTTTCTATCGACAACTTCTTCAGTTGTTAGAGGGGTTACTGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGAGGATAAAATATTGGGTTTGGCAAAATTTTTCCTGGGCGTTGGAATCCCAGGAGATGCCAAGGACTTCTTTAACCAAGTTGAGTCGTTAGCTTTTCTAGAGAGCAACAGGATTTCCATTCCATTGATATTGTCACTCCCTGAAACAGTTTATTCATTGACCAAGAAAGGCCAGCTTAAGGTTAAGGTGAATACAGTGCTTGGTTCAGCTGTACCACCTTTAACAGTTAAGGTTGTCCGTGCTTTTAGTACTGGTGCAAAAGATTCTGCTATTATTGACAGCAAGGAACTCCAGTATGACCAAGAAAGTGGATTTCATTTCTTGGATGCTTTTCCAAAGAATGTGGATGTGGAAACATATGTGTTTGTTTTTGAGATTGTGCTTCATGATTGTGGCAGTGAAAATGTTTATGCAACCGGAGGCCAAATTCATGTACCAATTTTTGTCACTGGAATTATTGAAGTCGGCAATGCAGAAATATCAGTTCTAAACAGTAATATTGGAAGTGCTGAAACCCAGAAAAAGCTAGATTTGGCTGGAAATGACGTTGTTTCACTCTCAGCTAATCACCTACAGAAGTTGAAGTTGTCTTTCCAATTGACAACACCTCATGGTCATGTTTTTAAGCCTCATCAGGCATTTATCAAGTTGAGACATGAGACAAAGGTTGAACACGTCTTTGTGGTTGGAAATACTGGCAAGAAGTTTGAGATAATTCTTGATTTTCTTGGCCTGGTGGAGAAACTGTTTTATCTCTCGGGTAGATATGACATTGAGCTTACTGTTGGTGATGCTACGATGGAGAACTCTTTCTTACAGCTACTTGGCCATGTTGAATTAGATCTTCCAGAAGCACCTGAGAAAGCAGCCCACCCTCCACCACCTCCTGTTGACCCTTACTCAAGATATGGGCCCAAAGCAGAGATTACCCATATATTCAGGGCTCCTGAAAAGAGACCAGACCAAAAACTCTCTCTTGCTTTCTTGGGTTTAATCCTTTTGCCATTCATTGGCTTTTTGGTTGGGTTATTGCGTTTGGGGGTGAACCTAAAGAATTTCCCTGGTTCAACGGTCCCTGCTACATTTGCGATCCTTTTCCATGTTGGTATTGGCGCAGTTTTGTTACTTTATGTACTCTTCTGGTTGAAGCTGGACCTGTTCACTACACTCAAAACAGTTGGTCTTTTGGGAGCTTTTCTGATGTTTGTGGGGCACAGAATCCTCTCTCATATCGCTTTGACATCAGCCAAGTTGAAATCTGCTTGA 2055 0.4185 MATHVAAATTFLLLLLLPFSTSVSHSHRSAAVHLFAPASASLEDAYEALRVFEILGIEEKTHSSTATCEKVLENLGSSSPLKDLFYALKVNKILKCNVNGEGFEDIASRLKANVHDASILLDIYYSIGGLVLMKDQDSNVDVLLADVDGVFQSIKALSQSDGRWRYSSDNPESSTYAAGLALEALAGVISLASSEIDQSKVNIVKNDIVKLFDGIEKYDDETFYFDEKFVGGNEQRGFLSTTSSVVRGVTAFAAVTSGKINLPEDKILGLAKFFLGVGIPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTKKGQLKVKVNTVLGSAVPPLTVKVVRAFSTGAKDSAIIDSKELQYDQESGFHFLDAFPKNVDVETYVFVFEIVLHDCGSENVYATGGQIHVPIFVTGIIEVGNAEISVLNSNIGSAETQKKLDLAGNDVVSLSANHLQKLKLSFQLTTPHGHVFKPHQAFIKLRHETKVEHVFVVGNTGKKFEIILDFLGLVEKLFYLSGRYDIELTVGDATMENSFLQLLGHVELDLPEAPEKAAHPPPPPVDPYSRYGPKAEITHIFRAPEKRPDQKLSLAFLGLILLPFIGFLVGLLRLGVNLKNFPGSTVPATFAILFHVGIGAVLLLYVLFWLKLDLFTTLKTVGLLGAFLMFVGHRILSHIALTSAKLKSA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01000 684 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 22 684 - -
Cca02g01000 684 Pfam Oligosaccharyltransferase subunit Ribophorin II 19 675 IPR008814 GO:0006487|GO:0008250|GO:0016021
Cca02g01000 684 PANTHER RIBOPHORIN II 22 684 IPR008814 GO:0006487|GO:0008250|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01000 Cca-Chr2 26377355 26384709 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01000 K12667 - gmx:100814831 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01000 02 26377355 26384709 Cca02g01000 02 26377355 26384709 ECH
Cca03g02220 03 42995135 43004360 Cca02g01000 02 26377355 26384709 PCT