Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02205 ATGGTGGATTCCTCTCTTTCTATATGGATTTGGTGCTTCACTCTCTACCCATTATCTCTCTTTTCCTTTATTTACTTTTTCTTTGGTTTATTTATGTGGGTTCGGAAAGAACAGGAGAAGAAAGAAGCTGAAGCCCCCTTGTTATGGTTCGAAACCTCTGACTCTGTTTGTCGCCGACACCAGTTTGAACCTGATGGTCGACTCTCCGTTGTGATTGTTGATGATTCCAGGCCCCTATACCAAAGGGTGGCTGGATGTTTCATGAATAAATTTTTCCCCTCGGGATATCCATACAGTGTGAATGAAGGCTATCTCAGATACACGCAGTTTCGGGCTTTGCAACATGTTACCAGTGCAGCGCTATCAGTTCTATCAACTCAGTCCTTGCTATTTGCTGCAGGGTTGCGGCCCACTCCTGCACAAGCAACTGCTGTTAGTTGGATTTTAAAGGATGGAATGCAACATGTAGGGAAGCTAATCTGTAGCAATTGGGGTGCTAGAATGGATTCTGAGCCTAAACGTTGGAGACTACTAGCTGATGTGCTCTATGATATCGGCATTGGCTTGGAAGTGCTTTCTCCATTATGCCCGCATCTTTTTCTAGAAGTGGCAGGCTTAGGAAATTTAGCAAAGGGGATGGCAGTTGTTGCAGCAAGAGCAACAAGATTGCCTATATATTCTTCATTTGCTAAAGAAGGAAATCTGAGTGACCTATTTGCTAAAGGAGAGGCTTTTTCAACTCTCTTTAATGTTGTTGGAATTGGAGTTGGAATTCAATTAGCATCTACTGTCTGTGCATCAATGCAGGGAAAGTTTGTTGTGGGTCCTCTCCTTTCCATATTACATATATACAGTGTGTCTGAAGAAATGAGAGCAACTCCTATCAATACCTTGAATCCACGAAGAACTGCAATGGTTGTGGCCGATTTTCTCAAGGAAGGAGTTGTAGCAAGCCCTGCTGATCTAAGATATAGAGAAAATCTGCTGTTTCCTCTGCAACTCAAAGAAGATGCTGGAAATGTAAGAGTGGGGAAGGATGTACACAAGGTCATTCAACCTTCCAGGCTTCTTGAGTTAAGACAAGTGTTCCCTAAGGAGAAGTTTCTTTTAAATTTTGGGGGAAATTGCATCAACATGGTGTTGGAGCAAGATGCTAGTGGTGAAGATGCATTGAGAGGGTGGCTAGTAGCTGCATATGCTTCACAAACTGAGAGTTCCTCTCATGAGCTCAATGGTAGTGTCATGCATGAGGCTTATGAGAAAATGAATGGTGTCTTTCCTGTATTCTTAAAGGAATTGCAGAACAAAGGGTGGCACACTGATAGGTTTTTGGATGGAACTGGAAGCCGTTTTGCACTCTAG 1362 0.4295 MVDSSLSIWIWCFTLYPLSLFSFIYFFFGLFMWVRKEQEKKEAEAPLLWFETSDSVCRRHQFEPDGRLSVVIVDDSRPLYQRVAGCFMNKFFPSGYPYSVNEGYLRYTQFRALQHVTSAALSVLSTQSLLFAAGLRPTPAQATAVSWILKDGMQHVGKLICSNWGARMDSEPKRWRLLADVLYDIGIGLEVLSPLCPHLFLEVAGLGNLAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAFSTLFNVVGIGVGIQLASTVCASMQGKFVVGPLLSILHIYSVSEEMRATPINTLNPRRTAMVVADFLKEGVVASPADLRYRENLLFPLQLKEDAGNVRVGKDVHKVIQPSRLLELRQVFPKEKFLLNFGGNCINMVLEQDASGEDALRGWLVAAYASQTESSSHELNGSVMHEAYEKMNGVFPVFLKELQNKGWHTDRFLDGTGSRFAL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02205 453 Pfam Vitamin B6 photo-protection and homoeostasis 82 313 IPR006968 -
Cca03g02205 453 PANTHER PROTEIN ROOT UVB SENSITIVE 2, CHLOROPLASTIC 36 452 - -
Cca03g02205 453 PANTHER RUS1 FAMILY PROTEIN C16ORF58 36 452 IPR006968 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02205 Cca-Chr3 42826249 42829724 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02205 - - ccaj:109797114 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02205 03 42826249 42829724 Cca03g02205 03 42826249 42829724 ECH
Cca03g02205 03 42826249 42829724 Cca02g01013 02 26729788 26733013 PCT