Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01013 ATGTATAGATTATATAGCAATAAGGATTACAAGTTTGCCACATTTTCTCTTCCAGTTTTGTTAGTATTCTTGGTCTGTATGCTTATTCTTCTGCAGTCACTGCTATTTGCTGCAGGCATGCGGCCCACTCCTGCACAGGCAACTGCTGTTAGTTGGGTTTTAAAGGATGGAATGCAACATTTAGGGAATATAATATGTAGCAATTTGGGTGCAAGAATGGATTCTGAGCCTAAACGTTGGAGAATTTTAGGTGATGTGCTCTATGATTTAGGCACTGGTTTGGAAGTGCTTTCTCCCTTATGTCCACAGCTTTTTCTTGAAATGGCGGGCCTAGGCAATTTTGCCAAGGGGATGGCAATTGTAGCAACAAGAGCTACAAGATTACCTATATATTCGTCATTTGCAAAAGAAGGAAATCTAAGTGACCTATTTGCCAGAGGGGAGGCTATTTCAACTCTCTTCAATGTTGTTGGAATTGGAGTTGGAATTCAATTAGCATCTACTGTATGTGCGTCAATGCAGGGAAAGTTGGTTGTGGGGCCTCTACTATCATTTATACACATATACTGCGTTACTGAAGAAATGAGAGCAACTCCTGTCAATACCTTGAATCCACAAAGAACTGCATTGATTGTGGCTGATTTTCTCAAGGCTGGAAATGTATCAAGCCCAGCTGATCTAAGATATCGAGAAGATTTGTTATTTCCTCATAGACTCGTAGAAGATGCTGGAAATGTAAGAGTGGGTAGGGCTTTTCACAAGGTTATTAAGCCTTCAAGGCTTTTTGAATTAAAACAAGTTTTCCCTGGGGAGAAGTTCTTTTTAAATGGTGATAATAGGTGCATTGACATGGTATTGGAGCGAGATGCTATTGGTGAAGATGCATTGAGAGGGTGGCTAGTTGCTGCATATGCGGTACAAATTGACAAGGCCTCTCATGAGCTCAGTACCAGGACCCTACTACAGGCCTACGAGAAAATGAATGAAGTTTTTCCCGTGTTTTTAAAAGAATTACAGTTCAAAGGGTGGCATACAGATCGCTTTCTGGATGGAAGTGGAAGCCGCTTTACATTGTAG 1077 0.4104 MYRLYSNKDYKFATFSLPVLLVFLVCMLILLQSLLFAAGMRPTPAQATAVSWVLKDGMQHLGNIICSNLGARMDSEPKRWRILGDVLYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGMAIVATRATRLPIYSSFAKEGNLSDLFARGEAISTLFNVVGIGVGIQLASTVCASMQGKLVVGPLLSFIHIYCVTEEMRATPVNTLNPQRTALIVADFLKAGNVSSPADLRYREDLLFPHRLVEDAGNVRVGRAFHKVIKPSRLFELKQVFPGEKFFLNGDNRCIDMVLERDAIGEDALRGWLVAAYAVQIDKASHELSTRTLLQAYEKMNEVFPVFLKELQFKGWHTDRFLDGSGSRFTL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01013 358 Pfam Vitamin B6 photo-protection and homoeostasis 12 218 IPR006968 -
Cca02g01013 358 PANTHER RUS1 FAMILY PROTEIN C16ORF58 31 357 IPR006968 -
Cca02g01013 358 PANTHER PROTEIN ROOT UVB SENSITIVE 2, CHLOROPLASTIC 31 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01013 Cca-Chr2 26729788 26733013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01013 - - gmx:100814176 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01013 02 26729788 26733013 Cca02g01013 02 26729788 26733013 ECH
Cca03g02205 03 42826249 42829724 Cca02g01013 02 26729788 26733013 PCT