Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02196 ATGTTTAGCAGGCCAAGGGGTGCCAGTGCTTTTAGTATATTCAAATGGAAACATCCAGGGGCGTCATCTCTGACAACAGGTTTACTTCACGAAGATCCGCCGGAGATTGAATTGTCTGATTATGGAAAGATCCCCAGTCCAGGAAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGTAGAACCAATTGCCGATTTGGATCTCTTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGGCTATGGTGCATCATTATTAAGTGGATTGTTGAACTTCTAAGTCTGGGGTTCACTATATGTTTTTCTGGATTTTTTTTACTATATGTAGATTGGAATGGGCTCCGTAATGCAAAGTGTGGGATGGATGCGGTTGAATCCGGAATTAAGCCCTGTGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTAACCCCACTAACACTTACCAAAGCTATTATTGTTGGATACTTGGGAATATTTTCTATCTATTGGATTTTTTGCTTCTTGAGATTCTTTGCTCAACTAAAGGATATTCTGGAAATTAGGCATTTTTACTATAACAGTCTCCATGTTACTGACAATGAGATTCAAACCATGCCCTGGGCTACAATTCTTGAAAAAGTTGTTCTGGTACAAAGGTCTCAACAACTTTGTGTGGTAAAAGATCTTTCTGCTCACGACATTGTCATGCGGTTGATGCGGAAGGAGAACTACTTAATTGGAATGCTCAACAAAGGTGTACTAGCTTTCCCTATTTCACAGTGGTTTCCAGGTGCTGGTCCAACAGTGAAATCTAGTTCTAATGGAACACAGAATCGTTTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAGAGCATGTTTGATCGAAACTTTTGTGTCAGAAGGGATTTTGTGTCAAATCCAAAGACATTACAAAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTCTACTCTCTCCATTTCTTGTCATATTCATGGTGGTATATCTCTTTTTGAGGCATGCTGAGCAATTCTATAATCATCCTAGCACGGCATCATCTCGAAGATGGTCAAATTTGTCTAGGTGGATCTTTAGGGAATTCAATGAGGTGGACCATCTCTTCAAGCACCGGATTAATAGCAGTGTATTGCATGCATCTGATTATGTCAAGCAATTTCCTTCACCCATCATATCTATCATTGCAAAATTCATCTCTTTTGTATCGGGTGGCTTCGCTGCAATTCTGATCATCATTGCTTTTCTCGAGGAGTCTCTACTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGGTGCTGTTTTTGGAGCTATAACTGCCATTAGCCGGGCTGCTATTACAAATGAGCTTCTGGTCTTAGATGCTGAGGGAGCAATGTCTATGGTGGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAAGTATTGAAATGGTCCGTGTTGAGTTTGAAACCTTATTTCAGTATACTGGAATGATGTTACTAGAGGAAATGGCCTCAATTTTCCTCACTCCGTACTTACTTCTGTTTGTTGTCCCAAAGCGGGTTGATGATATCTTGCAGTTCATTGCTGATTTCACTATAAATGTTGAGGGTGTTGGCCATGTTTGCAGTTTTAGCGCCTTTGATTTTCAAGAGCATGGAAACAGTCATTATGGTTCCCCTTGCAATGCTCCTTATAGCCGGAGAAGTTCCCAGGGGAAGATGGAGAAATCATTGCTGAGCTTTCAGAGTAGTTACCCATCTTGGGAACCAAATGCAGAGGGAAAGCAGTTCTTGCTAAATCTTAGAACATTCAGAGAGAGAAAGTTATCGGTGCGTGGGGACATACACGCGGCTTCCCCTCCTAGAATGTGGAGGGTTAGTCCCAATATGGGAAGCAATGGAGACAGAAACAGGTTCATATCCAGGGAAATGTCGTACAGTACTTCTGCAACTGGTAATCACTTGGGTTTGTGGTTGATTGAAGCCAACCAAAGCAATCATCCCTATCTTCTGGATTGGTACTATACATCTCGATCTCATGACGCCAATCTGGGAGATGTTCCTTCCGAACCATTTGGAGTAATAGAGCATCATTCTAGAGAGCATTGGATGCCCTCCACCTTGACACAGACTGCAAGTGGGTATGAGGAATACTCAAACGAGTATCACGAAGGTCGAGCTGCATCTCATCTTGGGACTTCCACATCAGTTCCAATCTTCAGGGAAAGCCTAATTCAGGATCGAATTTATAATGTACTGTCCCATCCTAGCAGGAGTCATTGGTGGGCTAGAAGTAACCCACAGGGTGGACAAACTCAGACAAGCTTTTATGAGCCTCCAGATTTCAATCAGGACACACATAATTATTATGAAAAGTTTTCTGATAAAGGGTCAGAGGATCAAGATCATGAACAGCACTTGTACTCTAGAGATAGTGACAGATTATCTAGAACATACACAGATGACTTAGGGGCAGGGGAATTTAATCTTCATTTTGACGATATATATAGCAGACCTCCAGATACTCCCCCTGCAAGCTTTTGA 2571 0.4197 MFSRPRGASAFSIFKWKHPGASSLTTGLLHEDPPEIELSDYGKIPSPGSESPSGLLNGESLNVEPIADLDLFFERLYSYYCEKGLWCIIIKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLAKEALHQHPLTPLTLTKAIIVGYLGIFSIYWIFCFLRFFAQLKDILEIRHFYYNSLHVTDNEIQTMPWATILEKVVLVQRSQQLCVVKDLSAHDIVMRLMRKENYLIGMLNKGVLAFPISQWFPGAGPTVKSSSNGTQNRLILTKTLEWTLNWCILQSMFDRNFCVRRDFVSNPKTLQKRLMVVGLAMLLLSPFLVIFMVVYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREFNEVDHLFKHRINSSVLHASDYVKQFPSPIISIIAKFISFVSGGFAAILIIIAFLEESLLEGHIFGRNLFWYGAVFGAITAISRAAITNELLVLDAEGAMSMVVQHTHYMPKRWRGKESIEMVRVEFETLFQYTGMMLLEEMASIFLTPYLLLFVVPKRVDDILQFIADFTINVEGVGHVCSFSAFDFQEHGNSHYGSPCNAPYSRRSSQGKMEKSLLSFQSSYPSWEPNAEGKQFLLNLRTFRERKLSVRGDIHAASPPRMWRVSPNMGSNGDRNRFISREMSYSTSATGNHLGLWLIEANQSNHPYLLDWYYTSRSHDANLGDVPSEPFGVIEHHSREHWMPSTLTQTASGYEEYSNEYHEGRAASHLGTSTSVPIFRESLIQDRIYNVLSHPSRSHWWARSNPQGGQTQTSFYEPPDFNQDTHNYYEKFSDKGSEDQDHEQHLYSRDSDRLSRTYTDDLGAGEFNLHFDDIYSRPPDTPPASF 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02196 856 PANTHER APG9 AUTOPHAGY 9 1 856 IPR007241 GO:0006914
Cca03g02196 856 PANTHER AUTOPHAGY-RELATED PROTEIN 9 1 856 - -
Cca03g02196 856 MobiDBLite consensus disorder prediction 772 791 - -
Cca03g02196 856 Pfam Autophagy protein ATG9 63 557 IPR007241 GO:0006914
Cca03g02196 856 MobiDBLite consensus disorder prediction 802 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02196 Cca-Chr3 42695790 42701585 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02196 K17907 - gmx:100777405 1528.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02196 03 42695790 42701585 Cca03g02196 03 42695790 42701585 ECH
Cca03g02196 03 42695790 42701585 Cca02g01035 02 27140272 27146985 PCT