Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00102 ATGAGTTACAGAAGAGATAATCGCTCCTCCAGATCATCACTTGTAGATGGTTTTGATAGTCTGGAGGAGGGTGGTCTAAAGGCTTCTTCTTCTTACTCGCGTGATATTAATGAGCATGATAATGATAAAGCCATAGAGAGTTTGCAGGACAGAGTCTCTTTTCTGAAACGATTAACAGGTGATATCCATGAGGAGGTTGAGAGTCATAACCAGTTACTTGATCGGGTGGGTAACAAAATGGATGGATCAAGGGGTATGATGATGGGAACCATGGATCGATTTAAGAAGGTTTTTGAGAAGAAATCAGCGAGGAAAACGTGCTCACTTGTGGCTTATTTCACAGTTGCCTTCGTATTCCTATACTATCTTATTAGGATTCTTGGATATTTTACACTTGGTCTGGAGGAGGGTGGTCTAAAGGCTTCTTCTTCTTACTCGCGTGATATTAATGAGCATGATAATGATAAAGCCATAGAGAGTTTGCAGGACAGAGTCTCTTTTCTGAAACGATTAACAGGTGATATCCATGAGGAGGTTGAGAGTCATAACCAGTTACTTGATCGGGTGGGTAACAAAATGGATGGATCAAGGGGTATGATGATGGGAACCATGGATCGATTTAAGAAGGTTTTTGAGAAGAAATCAGCGAGGAAAACGTGCTCACTTGTGGCTTATTTCACAGTTGCCTTCGTATTCCTTCTTAGTTCAAAGTTCTAA 717 0.4086 MSYRRDNRSSRSSLVDGFDSLEEGGLKASSSYSRDINEHDNDKAIESLQDRVSFLKRLTGDIHEEVESHNQLLDRVGNKMDGSRGMMMGTMDRFKKVFEKKSARKTCSLVAYFTVAFVFLYYLIRILGYFTLGLEEGGLKASSSYSRDINEHDNDKAIESLQDRVSFLKRLTGDIHEEVESHNQLLDRVGNKMDGSRGMMMGTMDRFKKVFEKKSARKTCSLVAYFTVAFVFLLSSKF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00102 238 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 148 210 IPR000727 -
Cca02g00102 238 PANTHER BET1-LIKE SNARE 1-2 1 127 - -
Cca02g00102 238 CDD SNARE_Bet1 38 96 IPR039899 -
Cca02g00102 238 Gene3D - 42 106 - -
Cca02g00102 238 Gene3D - 155 219 - -
Cca02g00102 238 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 35 97 IPR000727 -
Cca02g00102 238 SMART tSNARE_6 144 210 IPR000727 -
Cca02g00102 238 SMART tSNARE_6 31 97 IPR000727 -
Cca02g00102 238 CDD SNARE_Bet1 151 209 IPR039899 -
Cca02g00102 238 PANTHER GOLGI SNARE BET1-RELATED 1 127 IPR039897 GO:0015031|GO:0030173
Cca02g00102 238 PANTHER GOLGI SNARE BET1-RELATED 133 233 IPR039897 GO:0015031|GO:0030173
Cca02g00102 238 SUPERFAMILY SNARE fusion complex 34 97 - -
Cca02g00102 238 SUPERFAMILY SNARE fusion complex 147 210 - -
Cca02g00102 238 PANTHER BET1-LIKE SNARE 1-2 133 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00102 Cca-Chr2 1896752 1911889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00102 K08504 - gmx:100818014 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02187 03 42593390 42597316 Cca02g00102 02 1896752 1911889 PCT