Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02179 ATGCTGGTTCCAGTGCAAAAGGTTGGCAGTATCATTGGTCGAAAGGGCGAGTTTATAAAAAAAATTACAGAAGAGAGTAAGGCGCGGATTAAAATTCTTGATGGCCCACCTGGAATCTCAGAAAGAGCAGTAATGGTTTATGCAAAAGAAGAGCAAGATCAAAAACTAACGAATGATCTTGATGGTTTGTTAAGGGTCCATAAGCAAGTTATCAATGGAGACCGTGACCTTGGGGATAGCACTTTGGCTACTGGACGTTCAGTTGTTACCAGGCTTCTAGTGGCAGATACACAAGCAGGAAGCTTGATTGGGAAGCAGGGTGCCACCATAAAAGCCATTCAAGATGGCTCTGGTTGCACTATACGTGTTCTTGGATCAGAAAATCTGCCAGTATTTGCTTTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTGCTGGCGTTCACAAGGCAGTTGAACTTATTGCAGTTCATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTTGAAACACAGATGCAAATGCCAGATGTTAGAGTTAACCAGAATGTGCCACCACATCAAAATTGGGGTCCTCCTCCTCAAGGGTTTCCTGTTCCTGGTGGTGGCGGCGGTGGAGGACCTGCTTTTGCACCAAATCACCAATACATGCCACCTTCACATCATTATGATAGTTATTACCCACCTGCTGAGTTGCCCCCCATGGACAAGCACCTTCATCAAGGTCCACCACCTGCCTATGCAAGAGATGCTTCTATGGGAATTCATTCATCAAATGCACAACCACAACAATCTGGTGCAACTAAGGTTACACAGCACATGCAAATTCCTCTTTCATATGCAGATGCTGTTATAGGAACATCAGGAACAAATATTAGCTACATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGGACTTCTTCTCAAATACAGGCAGCCCAGCAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAGTTTGGTACAGGATCCTATGGGGGGATCAGTTAGCCAAGGTTACTCTGCCTATCCAACCAATGCTCCGGTTTATGCATCTCCACCCTCTAGCACTGGTGGTCATACTGGCCTCGCGCCATCTGCAGATTATGGCTCCATATATGGTACCAATTATGGGTATTAA 1200 0.4533 MLVPVQKVGSIIGRKGEFIKKITEESKARIKILDGPPGISERAVMVYAKEEQDQKLTNDLDGLLRVHKQVINGDRDLGDSTLATGRSVVTRLLVADTQAGSLIGKQGATIKAIQDGSGCTIRVLGSENLPVFALRDDSVVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFETQMQMPDVRVNQNVPPHQNWGPPPQGFPVPGGGGGGGPAFAPNHQYMPPSHHYDSYYPPAELPPMDKHLHQGPPPAYARDASMGIHSSNAQPQQSGATKVTQHMQIPLSYADAVIGTSGTNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFMAEAASLVQDPMGGSVSQGYSAYPTNAPVYASPPSSTGGHTGLAPSADYGSIYGTNYGY 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02179 399 CDD PCBP_like_KH 89 157 - -
Cca03g02179 399 CDD PCBP_like_KH 1 55 - -
Cca03g02179 399 ProSiteProfiles Type-1 KH domain profile. 273 337 - -
Cca03g02179 399 Coils Coil 330 350 - -
Cca03g02179 399 Gene3D K Homology domain, type 1 260 347 IPR036612 GO:0003723
Cca03g02179 399 CDD KH-I 275 338 - -
Cca03g02179 399 ProSiteProfiles Type-1 KH domain profile. 1 60 - -
Cca03g02179 399 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 1 393 - -
Cca03g02179 399 Gene3D - 1 165 - -
Cca03g02179 399 SMART kh_6 1 65 IPR004087 GO:0003676
Cca03g02179 399 SMART kh_6 272 342 IPR004087 GO:0003676
Cca03g02179 399 SMART kh_6 86 161 IPR004087 GO:0003676
Cca03g02179 399 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 393 - -
Cca03g02179 399 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 263 344 IPR036612 GO:0003723
Cca03g02179 399 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 84 170 IPR036612 GO:0003723
Cca03g02179 399 Pfam KH domain 1 52 IPR004088 GO:0003723
Cca03g02179 399 Pfam KH domain 90 156 IPR004088 GO:0003723
Cca03g02179 399 Pfam KH domain 275 338 IPR004088 GO:0003723
Cca03g02179 399 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 1 55 IPR036612 GO:0003723
Cca03g02179 399 ProSiteProfiles Type-1 KH domain profile. 87 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02179 Cca-Chr3 42403857 42409606 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02179 K21444 - gmx:100799901 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02179 03 42403857 42409606 Cca02g01057 02 27441207 27447640 PCT