Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01057 ATGTCTGGGGAAGTTTATGATGGACAAGATGCAAGCTACGTGCCTGAGAACCCTGAGTTTCCGCAAAACCATTCTGATGAACACGATGGAGGAAATGTGATTGATGACTCAGGGTTTCCGCAACTGCAGCCCGATGAACATGATGCGGACAATTTGGCTGAGGATGCCATTGCCGACCATCCTGAAAATAATTTTGATGGGAATGACATTGAAGGTTTGCCTGAAAACCCTGATTTTCCTTCGGAAGAGAATGCCGAGGAACAACATGGTGAAGGAGATTTGACTGAGAATTTTGGTACTGAGGAAAAACAGGGATCTGAGGAGGATTCAAAAGGAGGTGAAATAAAGAAGTGGCCAGGGTGGCCTGGAGAGAATGTTTTTAGGATGTTGGTTCCTGTGCAGAAGGTTGGAAGTATTATTGGCCGTAAGGGTGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGTATAAAAATTCTTGATGGTCCACCTGGAACTGCAGAACGAGCTGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCAGCATACCGCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTTGACCCTCATCCTGCTGATAGTGCATCAGGTGCAGGGCGCCCAGTTGTTACAAGACTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAACAGGGGTCCACTATAAAATCATTTCAAGATGGCACAGGATGCAATATACGGGTTCTTGGTTCAGAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTCCTGGGGTTCACAAGGCAGTTGAACTTATTGCTATTCATCTACGAAAATTCTTGGTCGACCGCAGCATTGTTGGAGTATTTGAAACACAGATGCAAAGGCCAGATGTTCGAGCAAACCAGAATGTTCCACCAGGCCCACCACACCAACCTTGGGGTCCTCCTCAAGGTTTTCCAGCTCCTGGACCTGGTAGTGGTGGTGGACCTGCTTTTCCACCCAATCCTCAGTATATGCCACCTTCACATAACTATGATAATTACTACCCACCTGCTGACCTGCCTCCTATGGACAAGCACCTTCATCAGGGTCCAGCACCTGCTTATGTAAGAGATGCTTCTATGGGAATTCATTCATCCAGTGCACAGCCACAACAGTCTGTTGTGACTAAGGTCACCCAGCATATGCAAATTCCTCTGTCCTATGCAGATGCTGTTATTGGAGCGTCAGGGGCAAACATCAGCTACATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAGACCAGAGGTGTGCCAGGAGAGATGACTGTTGAGATTAGTGGGACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGAATTTCATGGCTGAAGCAGCAAGTGCGACGCAGGATCATATGGGGGGATCAATTAATCAAGGTTACAATTCCTATCCAACTAATGCTCCTGTGTATGCATCTCCACCCCCAAGTGCTGGTGGTCATGCAGGCCATGTACCTTCTGCAGATTATGGTCCCGTTTATGGCACCAATTATGGTTATTGA 1590 0.4654 MSGEVYDGQDASYVPENPEFPQNHSDEHDGGNVIDDSGFPQLQPDEHDADNLAEDAIADHPENNFDGNDIEGLPENPDFPSEENAEEQHGEGDLTENFGTEEKQGSEEDSKGGEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAVMVSAKEEPDRSIPPAVDGLLRVHKQVVNVDPHPADSASGAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDGTGCNIRVLGSEHLPVFALRDDSVVEIQGESPGVHKAVELIAIHLRKFLVDRSIVGVFETQMQRPDVRANQNVPPGPPHQPWGPPQGFPAPGPGSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPAPAYVRDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASATQDHMGGSINQGYNSYPTNAPVYASPPPSAGGHAGHVPSADYGPVYGTNYGY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01057 529 Pfam KH domain 405 468 IPR004088 GO:0003723
Cca02g01057 529 Pfam KH domain 218 284 IPR004088 GO:0003723
Cca02g01057 529 Pfam KH domain 127 179 IPR004088 GO:0003723
Cca02g01057 529 MobiDBLite consensus disorder prediction 1 121 - -
Cca02g01057 529 MobiDBLite consensus disorder prediction 314 352 - -
Cca02g01057 529 CDD PCBP_like_KH 217 285 - -
Cca02g01057 529 Gene3D - 124 293 - -
Cca02g01057 529 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 51 523 - -
Cca02g01057 529 ProSiteProfiles Type-1 KH domain profile. 215 284 - -
Cca02g01057 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 394 474 IPR036612 GO:0003723
Cca02g01057 529 Gene3D K Homology domain, type 1 390 479 IPR036612 GO:0003723
Cca02g01057 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 116 179 IPR036612 GO:0003723
Cca02g01057 529 ProSiteProfiles Type-1 KH domain profile. 403 467 - -
Cca02g01057 529 CDD KH-I 405 468 - -
Cca02g01057 529 MobiDBLite consensus disorder prediction 82 115 - -
Cca02g01057 529 SMART kh_6 214 289 IPR004087 GO:0003676
Cca02g01057 529 SMART kh_6 123 196 IPR004087 GO:0003676
Cca02g01057 529 SMART kh_6 402 472 IPR004087 GO:0003676
Cca02g01057 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 208 297 IPR036612 GO:0003723
Cca02g01057 529 MobiDBLite consensus disorder prediction 41 66 - -
Cca02g01057 529 Coils Coil 460 480 - -
Cca02g01057 529 CDD PCBP_like_KH 126 195 - -
Cca02g01057 529 MobiDBLite consensus disorder prediction 309 377 - -
Cca02g01057 529 ProSiteProfiles Type-1 KH domain profile. 124 191 - -
Cca02g01057 529 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 51 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01057 Cca-Chr2 27441207 27447640 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01057 K21444 - gmx:100818363 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01057 02 27441207 27447640 Cca02g01057 02 27441207 27447640 ECH
Cca03g02179 03 42403857 42409606 Cca02g01057 02 27441207 27447640 PCT