Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02172 ATGGTTGTAGCGGAGTTTCGTTTTCGTTGTGGTAGTGGCAGTGGCAGTGGCAGGCAGGAGGGAAATACTACCACTTCATTCTTGCAACATGCATGTTCAAGTACCGCGCTTCCATCGTTGGCGTGTCAACCTGGCGGCACAAATCCCGAAGCACCCCCCAAGAGCGACCAACGGTTCCTTCGTGCACCGATGAATCAATCGCGTCGCTGGCAGAGGACTCTGATCCTCGCTCTGCTCTCTCTCTCCGTCGTTGCTCCTCTCGTTTTCGTCTCTCACAGGCTTAAGGCTTTCACTTCCGAAGGACGACAGGACTTTCTTGATGATTTATCCAGTGTTACATACAGGACAGATCCTCTAAGGCTAAATGCTATTGAACAGGAAGGCGCTGAAGAGTTAGAAGAGCCACAGCAAGTTGTTTATAAAGAAAAAGATCTTGGTTCAACAAATAGTTACATTTCACAACAGGTTAATGATTTGGTGGAATCTAGAAATGACGGGTACAGAAATAACATTTTGGAAAGAAATGAATCCGACCATAACAAAAGACAAGACCAGGAACCTCAGAAGAAATTGTTCATGGATGGGGATGAGAAAATATTTAATAAAACAGTTGCACACAATCAGAATATACACACTCAGTCTCAAAGAATGAAAGATGAAGTTGAAGTGACAGATAAGCAATCTGGTCCAAAAGCAACCCAATATCATCAGAGTTCACGCCCTCAGTCTCGGAGAGGAGGGACGAATCAGAAGGTTTTGGAAATTAAGGATCAAATTATTAGAGCGAAAGCATATCTGGGCTTTGCCCCTCCAAGCAGCAACTCACACTTGGTGAAGGAGTTGAAGTTGAGAATTAAAGAGATGGAACGTGCAGTTGGAGAAGCTACTAAAGATTCAGATCTGTCAAGGAGTGCTTTGCAGAAAATGCGACACATGGAGGCTTCACTGTCTAAAGCCAATCGTGCTTTCCCAGACTGTACTTCTATGGCTTCTAAGTTCCGTGCAATGAATCATAATGCTGAAGAGCAAGTTCGTTCTCACCGACAACAAGCAACATATCTTGTTCATCTTGCTGCAAGGACCACCCCAAAAGGTCTTCACTGTCTTTCTATGCAGTTAACTGCTGACTACTTTGCCCTGAGACCTGAGGACCGGAAGCTTCCACATGAAAATAAGATTCATGATCCAAAACTTCATCATTATGCTGTCTTCTCTGACAATGTTCTGGCATGTGCAGTGGTTGTTAACTCCACTGTCTTCAATGCTAAGAAACAGGAGAAACTTGTTTTCCATGTAGTGACCAATTCACTCAACCTTCCTGCAATCCGGATGTGGTTCTTATTAAACCCTCCTGGCAAAGCCACAGTCCACGTACAAAGCATAGAGAACTTTGAATGGTTGCCCAAGTACAACACATTCAAGGAACACAATTCCAGTGATCCAAGATATACGTCTGAGTTGAACTACCTACGTTTCTACCTGCCAGATATCTTCCCTACTTTAAATAAGATTCTGCTCTTTGATCATGATGTGGTAGTGCAAAAAGATCTCAGTGGACTATGGAATGCCAATATGAAAGGAAAAGTAATTGCAGCAGTTGGCACTTGTCAGGAAGGTGAAACTTCATTTCACAGGATGGATATGTTCATAAACTTCTCAGACCCATTCATTGCAAAGAGGTTTGATGTCAATGCTTGCACGTGGGCATTTGGGATGAACTTCTTTGATTTACAACAGTGGAGGAGACATAATTTAACTGATCTCTACCACAGATACTTGCAAATGGGTTCCAAGAGGCCATTGTGGAACATTGGAAGTCTGCCTTTAGGCTGGCTCACTTTCTATAACAAGACTATGGTTTTGGACAGACGGTGGCACATTCTTGGCCTTGGTTATGACTCAGGTGTCGATAGAAACGAGATTGAACGGGCTGCCGTTATACACTACGATGGAATTAGGAAACCATGGTTGGACATTGCGATGGGAAGATATAGAAATTATTGGACCAAATTTATGAAGTTTGACCTCCCTATTTTGCAACGTTGCAATCTCCAGGCGTAG 2061 0.4338 MVVAEFRFRCGSGSGSGRQEGNTTTSFLQHACSSTALPSLACQPGGTNPEAPPKSDQRFLRAPMNQSRRWQRTLILALLSLSVVAPLVFVSHRLKAFTSEGRQDFLDDLSSVTYRTDPLRLNAIEQEGAEELEEPQQVVYKEKDLGSTNSYISQQVNDLVESRNDGYRNNILERNESDHNKRQDQEPQKKLFMDGDEKIFNKTVAHNQNIHTQSQRMKDEVEVTDKQSGPKATQYHQSSRPQSRRGGTNQKVLEIKDQIIRAKAYLGFAPPSSNSHLVKELKLRIKEMERAVGEATKDSDLSRSALQKMRHMEASLSKANRAFPDCTSMASKFRAMNHNAEEQVRSHRQQATYLVHLAARTTPKGLHCLSMQLTADYFALRPEDRKLPHENKIHDPKLHHYAVFSDNVLACAVVVNSTVFNAKKQEKLVFHVVTNSLNLPAIRMWFLLNPPGKATVHVQSIENFEWLPKYNTFKEHNSSDPRYTSELNYLRFYLPDIFPTLNKILLFDHDVVVQKDLSGLWNANMKGKVIAAVGTCQEGETSFHRMDMFINFSDPFIAKRFDVNACTWAFGMNFFDLQQWRRHNLTDLYHRYLQMGSKRPLWNIGSLPLGWLTFYNKTMVLDRRWHILGLGYDSGVDRNEIERAAVIHYDGIRKPWLDIAMGRYRNYWTKFMKFDLPILQRCNLQA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02172 686 MobiDBLite consensus disorder prediction 167 187 - -
Cca03g02172 686 Coils Coil 278 298 - -
Cca03g02172 686 MobiDBLite consensus disorder prediction 163 187 - -
Cca03g02172 686 Pfam Glycosyl transferase family 8 368 660 IPR002495 GO:0016757
Cca03g02172 686 MobiDBLite consensus disorder prediction 227 249 - -
Cca03g02172 686 MobiDBLite consensus disorder prediction 208 250 - -
Cca03g02172 686 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 389 675 IPR029044 -
Cca03g02172 686 PANTHER HEXOSYLTRANSFERASE 64 685 - -
Cca03g02172 686 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 64 685 IPR029993 GO:0047262
Cca03g02172 686 SUPERFAMILY Nucleotide-diphospho-sugar transferases 400 683 IPR029044 -
Cca03g02172 686 Coils Coil 330 350 - -
Cca03g02172 686 CDD GT8_like_1 399 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02172 Cca-Chr3 42322971 42332818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02172 64 686 Glycosyltransferase AT1G06780 49.687 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02172 K13648 - gmx:100793193 1042.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02172 03 42322971 42332818 Cca02g01068 02 27639333 27646135 PCT