Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01068 ATGAACCAAATCCGTCGCTACCAGAGGATtctcatcctctctctgctctttctctccgtcattgctcctctcctcttcgtcactcctctcgGGAGAAGAGAGTTTCTTGAAGATTTATATCGCGCTACATACAGGACAGATACGATGAAGTTAAATGCTGTAGAACAGGAAGGTGCTGAAGAATTAGAAGAGCCAAATCAAGTTGTTTATACGGAAAAAGATTTTGTTTCAGCAATTAATTACAATTCAAAACAGAATAATGATTCTAAGGAGTCTGGAATTGCAGGGTACAGAGGTATCACTTTAGAAAGAAATGGATTCATCAATAAAAGACAACACCAAGGAGCTCAGCAGAAAGAACTATCCTTCGTGGCTCAAGGTAGGAATATACATGATTCACAGAGAATATCAGAGAAGAATATTGAAGTGACAAATAAGAAGGTTCAAGAGATTAAGGATCAAATTATTTTAGCCAAAGCGTACTTGAAAATTGCACCACCAAGCAGCAATTTACGCTTGAGGGAGTTGGACCAGCTAACGAGAGAGATGGAATTATCAATTGGAGAAGTCACCCAGGATTCAGATCTGTCAACAAGTGCTTTGCAGAAAATGAGACACATGGAGGCTTCACTGTCTAAAGTCTACCGTGCTTTCCCAGACTGCTCTGCAATGGCTGCTAAGCTCCATACAATGAAGCGTCAGGCTGAAGAGCAAGTCCGTTCTCAGCGAAATCAAGCAACATATCTTGTTAATCTTGCTGCAAGGACTGCCCCAAAAGGCCTTCACTGTCTTTCTATGCGCTTGACTGCAGAATACTTTGCCTTGAGGCCTGAGGAGAGAAAGCTTCCAAATGAAAAAAAAATTTATCATCCAGACCTTTATCATTATGCTGTCTTCTCTGACAATGTTCTGGCATGTGCAGTGGTTGTTAACTCTACAATCTCTACTGCCAAGGAACAGGAGAAACTTGTTTTCCACGTATTGACCAAATCAGTCAACTTACCAGCAATCTCAATGTGGTTCTTATTAAATCCACCTGGCAAAGCTACAGTCCACATACAGAGCATAGACAACTTTGAATGGTTGTCCAACTACAATAACTACCAGGAAAATAATTCCAGTGATCCAAGATACACTTCTGAATTGAACTACCTGCGTTTCTACCTGCCAGACATTTTTCCTGCTCTAAATAAGATTGTGCTTTTGGATCATGATGTGGTGGTGCAACAAGATCTCAGTGGACTATGGAATACCGATATGAAGGAAAATGTAATTCAAGCAGTTGGAACTTGTCAAGAAGGGAAAATCCCATTTCATAGGATTGATATGTTCATAAACTTCTCAGATCCTTTAATTGGAAAGAGGTTTGATCACTTTGATGTCAATGCTTGCACATGGGCATTTGGGATGAACTTGTTTGATTTGCAACAGTGGAGGAGACATAATTTATCTGCTGTCTATCACAAGTATTTGGAAATGGGTTTGTGGAGCGTTGGAAGCCTACCTTTAGGCTGGCTCACTCTATATAACAAGACAGATTTGTTGGATAGACAATGGCATGTTCTTGGCCTTGGTTATAGTTCAGGCGTCGATCGAAATGAGATTGAGCGGGCTGCCGTTATACACTATGATGGGATTAGGAAGCCGTGGCTGGATATTGCAATGGGCAGATATAAAAGTTATTGGACCAAATTTTTGAATTTTGACAACCCTTTCTTGCAACAGTGCAATCTCCAGGCATAG 1743 0.3896 MNQIRRYQRILILSLLFLSVIAPLLFVTPLGRREFLEDLYRATYRTDTMKLNAVEQEGAEELEEPNQVVYTEKDFVSAINYNSKQNNDSKESGIAGYRGITLERNGFINKRQHQGAQQKELSFVAQGRNIHDSQRISEKNIEVTNKKVQEIKDQIILAKAYLKIAPPSSNLRLRELDQLTREMELSIGEVTQDSDLSTSALQKMRHMEASLSKVYRAFPDCSAMAAKLHTMKRQAEEQVRSQRNQATYLVNLAARTAPKGLHCLSMRLTAEYFALRPEERKLPNEKKIYHPDLYHYAVFSDNVLACAVVVNSTISTAKEQEKLVFHVLTKSVNLPAISMWFLLNPPGKATVHIQSIDNFEWLSNYNNYQENNSSDPRYTSELNYLRFYLPDIFPALNKIVLLDHDVVVQQDLSGLWNTDMKENVIQAVGTCQEGKIPFHRIDMFINFSDPLIGKRFDHFDVNACTWAFGMNLFDLQQWRRHNLSAVYHKYLEMGLWSVGSLPLGWLTLYNKTDLLDRQWHVLGLGYSSGVDRNEIERAAVIHYDGIRKPWLDIAMGRYKSYWTKFLNFDNPFLQQCNLQA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01068 580 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 296 571 IPR029044 -
Cca02g01068 580 PANTHER HEXOSYLTRANSFERASE 1 579 - -
Cca02g01068 580 Coils Coil 225 245 - -
Cca02g01068 580 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 1 579 IPR029993 GO:0047262
Cca02g01068 580 SUPERFAMILY Nucleotide-diphospho-sugar transferases 294 577 IPR029044 -
Cca02g01068 580 Pfam Glycosyl transferase family 8 263 554 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01068 Cca-Chr2 27639333 27646135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01068 1 580 Glycosyltransferase AT1G06780 48.039 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01068 K13648 - gmx:100819255 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01068 02 27639333 27646135 Cca02g01068 02 27639333 27646135 ECH
Cca03g02172 03 42322971 42332818 Cca02g01068 02 27639333 27646135 PCT