Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02170 ATGGTCATGGCTGCATTCATCCCAAACATAGTGGTGGCCTTGCCAAAGCCGAAAACCCACCAACCCCTAAGGAAGCCCAAACCCACTGTTTCATGCAAGGCCACCCAACAAAAGTCCATATCAGATGTGTGGCGCAAGATACACGGCGAGGACGACTGGGCCGGCCTTCTCGACCCAATGGACCCTCTAATGCGGTCGGAGCTGATCCGGTACGGCGAGATGGCCCAGGCCTGCTACGACGCATTCGACTTCGACCCATACTCAAAGTACTGCGGCAGCTGCAGGTACTCCCCCTCCGAATTCTTCGACTCCCTGGACATGAGCCACGTGGGATACACCCCCACGCGCTTCCTCTACGCGACGGCCAACATCAACCTCCCAAACTTGTTCCGCAAGTCGCGCTGGCCCAGCAAGATGTGGAGCAAGCACGCCAACTGGGCCGGCTACATCGCTGTCTCCAACGACGCCATGACAAAGCTATTGGGCCGAAGAGACATAACAATCGCGTGGCGAGGCACCGTGACCCACGTGGAGTGGGTGGCGGATCTCATGAACTACCTGAAGCCCATCTCGGGCGAGGGAGACGTGAAAGTGGAGGCGGGTTTCTTGGAGTTGTACACCGACAAGGAGACAACCTGCGGCTACTGCAAATACTCAGCGAGGGAACAGGTTCTGGCCGAGGTGAAGCGTTTGTTGGACAAGTATTCGCAGGAGGAGGTTAGTGTTACGATAACGGGGCATAGCCTTGGGAGTGCGATGGGTATATTGAGCGCCTTTGATATTGCGGAAAGGGGGTTGAAGGCGGGGACGTCGACGGTGTTTTCGTTTTCGGGGCCCAGGGTGGGGAACTTGAGGTTTAAGGAGAGGTTGGAGGAGTTGGGGGTGAAGGTGCTGAGGGTGCATAACAGTCATGACATGGTGCCGCGGTCGCCGGGGATGTTTTTGAACGAGGGTTTGCCAAGGTGGGTGGTGAATCTCGTGCAGGGGTTGCCCTGGTGTTATCTGCATGTTGGGGTGGGGTTAGAGTTGGATCATAAGAAATCCCCGTTTTTGAATCCTAATGCTGATGCTGCTTCCGCTCATAACTTGGAGGCAATCTTGCACTTGCTTGACGGATACCATGGGAAGCATGGTGCATTTAAGCGAACGAGTGAGAGAGACCTTGCTTTGGTGAACAAGGACTGTGACTTTTTGAAAGATGAGCATACGGTGCCACCACGTTGGAGGCAAGACTTGAACAAGGGTATGGTCAAGACTCAAGATGGACGCTGGGTTCTTGCAGACCGTCCAAAACCTCACGATCCCACTCAAGATCTTCATCACTGA 1326 0.549 MVMAAFIPNIVVALPKPKTHQPLRKPKPTVSCKATQQKSISDVWRKIHGEDDWAGLLDPMDPLMRSELIRYGEMAQACYDAFDFDPYSKYCGSCRYSPSEFFDSLDMSHVGYTPTRFLYATANINLPNLFRKSRWPSKMWSKHANWAGYIAVSNDAMTKLLGRRDITIAWRGTVTHVEWVADLMNYLKPISGEGDVKVEAGFLELYTDKETTCGYCKYSAREQVLAEVKRLLDKYSQEEVSVTITGHSLGSAMGILSAFDIAERGLKAGTSTVFSFSGPRVGNLRFKERLEELGVKVLRVHNSHDMVPRSPGMFLNEGLPRWVVNLVQGLPWCYLHVGVGLELDHKKSPFLNPNADAASAHNLEAILHLLDGYHGKHGAFKRTSERDLALVNKDCDFLKDEHTVPPRWRQDLNKGMVKTQDGRWVLADRPKPHDPTQDLHH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02170 441 SUPERFAMILY alpha/beta-Hydrolases 69 354 IPR029058 -
Cca03g02170 441 Pfam Lipase (class 3) 168 313 IPR002921 GO:0006629
Cca03g02170 441 CDD Lipase_3 99 345 - -
Cca03g02170 441 Gene3D alpha/beta hydrolase 43 439 IPR029058 -
Cca03g02170 441 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 33 441 - -
Cca03g02170 441 PANTHER PHOSPHOLIPASE A1 33 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02170 Cca-Chr3 42316449 42320630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02170 33 441 Acyl Lipid Metabolism Gene Families AT2G30550 60.094 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02170 - - gmx:100815007 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02170 03 42316449 42320630 Cca02g01071 02 27669104 27674476 PCT